View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_204 (Length: 246)
Name: NF1126_low_204
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_204 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 14548412 - 14548623
Alignment:
| Q |
20 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14548412 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
14548511 |
T |
|
| Q |
120 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
219 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14548512 |
cgtcatattgttcgtttatgggacatctttgagattgatccaaatacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
14548611 |
T |
|
| Q |
220 |
gaagataattat |
231 |
Q |
| |
|
|||||||||||| |
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|
| T |
14548612 |
gaagataattat |
14548623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 37525889 - 37526098
Alignment:
| Q |
20 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37525889 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37525988 |
T |
|
| Q |
120 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
219 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
37525989 |
cgtcatattgttcgtttatgggacatctttgagattgatccaaatacattctgcactgttctagagtattgcagcggtatatacacctcatatgttttat |
37526088 |
T |
|
| Q |
220 |
gaagataatt |
229 |
Q |
| |
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|||||||||| |
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| T |
37526089 |
gaagataatt |
37526098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 37588050 - 37588261
Alignment:
| Q |
20 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37588050 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37588149 |
T |
|
| Q |
120 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
219 |
Q |
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|
||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
37588150 |
cgtcatattgttcgtttatggaacatctttgagattgatccaaatacattctgcactgttctagagtattgcagcggtatatacacctcatatgttttat |
37588249 |
T |
|
| Q |
220 |
gaagataattat |
231 |
Q |
| |
|
|||||||||||| |
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|
| T |
37588250 |
gaagataattat |
37588261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 37690326 - 37690537
Alignment:
| Q |
20 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37690326 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37690425 |
T |
|
| Q |
120 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||| | |
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| T |
37690426 |
cgtcatattgttcgtttatgggacatctttgagattgatccaaatacattctgcactgttctagagtattgcagcggtatatacaccttatatgtttttt |
37690525 |
T |
|
| Q |
220 |
gaagataattat |
231 |
Q |
| |
|
|||||||||||| |
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|
| T |
37690526 |
gaagataattat |
37690537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 37618624 - 37618790
Alignment:
| Q |
20 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
37618624 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggttcat |
37618723 |
T |
|
| Q |
120 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagt |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
37618724 |
cgtcatattgttcgtttatgggacatctttaagattgatccaaatacattctgcactgttctggagt |
37618790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 37794392 - 37794558
Alignment:
| Q |
20 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
37794392 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggttcat |
37794491 |
T |
|
| Q |
120 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagt |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
37794492 |
cgtcatattgttcgtttatgggacatctttaagattgatccaaatacattctgcactgttctggagt |
37794558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 37787645 - 37787856
Alignment:
| Q |
20 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||| | ||||||||||||||||| ||||| |
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|
| T |
37787645 |
caagcttcatggtttaaatgctcaatgggctgaagagaagaagctaagttacatgaggcatgcaattcgagagtgtcatattcacaagaccttggtccat |
37787744 |
T |
|
| Q |
120 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
219 |
Q |
| |
|
|| || ||||||| |||||||||||||||| | |||||||| | |||||||||||||||||||| || || || ||||||||||||||||||||||||| |
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|
| T |
37787745 |
cgccacattgttcgtttatgggacatctttcaaattgatccggatacattctgcactgttctagaatattgtagtggtatatacacctcatctgttttat |
37787844 |
T |
|
| Q |
220 |
gaagataattat |
231 |
Q |
| |
|
||||||| |||| |
|
|
| T |
37787845 |
gaagatacttat |
37787856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 37611060 - 37611126
Alignment:
| Q |
165 |
acattctgcactgttctagagtactgcagcggtatatacacctcatctgttttatgaagataattat |
231 |
Q |
| |
|
|||||||||||||||||||| || || || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37611060 |
acattctgcactgttctagaatattgtagtggtatatacacctcatctgttttatgaagatacttat |
37611126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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