View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_207 (Length: 241)
Name: NF1126_low_207
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_207 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 38220170 - 38219957
Alignment:
| Q |
4 |
accataaggatggaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattcagg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
38220170 |
accataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatctatggtgttgcacatcaacattcggg |
38220071 |
T |
|
| Q |
104 |
tggaatcggatccaccctatatggacaggtaatttccaatagttacatacaacttactgttattcttaaatacttggtgtagcgtgatatatagtttgac |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
38220070 |
tggaatcggatccaccctatatggacaggtaatttccaatagttacatacagcttacttttattcttaaatacttggtgtagcgtg----atagtttgac |
38219975 |
T |
|
| Q |
204 |
cttgcaacctcaataaac |
221 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
38219974 |
cttgcaacctcaataaac |
38219957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 38243028 - 38242881
Alignment:
| Q |
1 |
cagaccataaggatggaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattc |
100 |
Q |
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||||||||| ||| | |||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
38243028 |
cagaccatagggaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatcagcattc |
38242929 |
T |
|
| Q |
101 |
aggtggaatcggatccaccctatatggacaggtaatttccaatagtta |
148 |
Q |
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| T |
38242928 |
aggtggaattggatccaccctatatggacaggtaatttccaatagtta |
38242881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 38238053 - 38237919
Alignment:
| Q |
1 |
cagaccataaggatggaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattc |
100 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
38238053 |
cagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatcaacattc |
38237954 |
T |
|
| Q |
101 |
aggtggaatcggatccaccctatatggacaggtaa |
135 |
Q |
| |
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||| ||||| ||||| || |||||||||||||||| |
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| T |
38237953 |
aggcggaattggatcaactctatatggacaggtaa |
38237919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38226514 - 38226372
Alignment:
| Q |
1 |
cagaccataaggatggaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattc |
100 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||| ||| |||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
38226514 |
cagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattc |
38226415 |
T |
|
| Q |
101 |
aggtggaatcggatccaccctatatggacaggtaatttccaat |
143 |
Q |
| |
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||||||||| ||||| || ||||| || |||||||||| |||| |
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| T |
38226414 |
aggtggaattggatcaactctatacgggcaggtaatttacaat |
38226372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 38253373 - 38253236
Alignment:
| Q |
9 |
aaggatggaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattcaggtggaa |
108 |
Q |
| |
|
||||| |||||||| ||||||||||| || |||| ||| |||||| | ||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
38253373 |
aaggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaa |
38253274 |
T |
|
| Q |
109 |
tcggatccaccctatatggacaggtaatttccaatagt |
146 |
Q |
| |
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| ||||| ||||||| |||||||||||||| ||||||| |
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| T |
38253273 |
ttggatcaaccctatttggacaggtaatttgcaatagt |
38253236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 38214120 - 38213986
Alignment:
| Q |
16 |
gaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattcaggtggaatcggatc |
115 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| |||||| | ||||||||||||||||| |||||| |||||| ||||| |||||||| ||||| ||||| |
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| T |
38214120 |
gaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatc |
38214021 |
T |
|
| Q |
116 |
caccctatatggacaggtaatttccaatagttaca |
150 |
Q |
| |
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|| ||||||||||||||||||| ||||| ||||| |
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| T |
38214020 |
aactctatatggacaggtaatttgcaatacttaca |
38213986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 17454610 - 17454459
Alignment:
| Q |
1 |
cagaccataaggatggaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattc |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
17454610 |
cagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatcaacattc |
17454511 |
T |
|
| Q |
101 |
aggtggaatcggatccaccctatatggacaggtaatttccaatagttacata |
152 |
Q |
| |
|
||| ||| | ||||| || |||||||||||||||||| ||||||||||||| |
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| T |
17454510 |
agggggagttggatcaactttatatggacaggtaatttgcaatagttacata |
17454459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 17433530 - 17433380
Alignment:
| Q |
2 |
agaccataaggatggaaatggttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattca |
101 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||||||||| ||| |||||| | ||||||||||| ||||||||||||| |||||| |||||||||||| |
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| T |
17433530 |
agaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattca |
17433431 |
T |
|
| Q |
102 |
ggtggaatcggatccaccctatatggacaggtaatttccaatagttacata |
152 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||||||| ||||||||||||| |
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|
| T |
17433430 |
ggtggaactggatcaactctatacggacaggtaatttgcaatagttacata |
17433380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 11473504 - 11473615
Alignment:
| Q |
22 |
gttgtgttcatgtgaagaggataagcctcccatttcaaactggtggctatgtgatctatggtgttgcacatcaacattcaggtggaatcggatccaccct |
121 |
Q |
| |
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||||||| |||| ||||| | |||| ||||| | |||| |||||| ||| | |||||||| |||| |||||||||||||||| ||| ||||| || || |
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| T |
11473504 |
gttgtgtcgatgtcaagagaacaagcttcccaatgcaaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactct |
11473603 |
T |
|
| Q |
122 |
atatggacaggt |
133 |
Q |
| |
|
||||||| |||| |
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|
| T |
11473604 |
atatggaaaggt |
11473615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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