View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_209 (Length: 234)
Name: NF1126_low_209
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_209 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 35529688 - 35529472
Alignment:
| Q |
18 |
atatgcattaacacacggtgttctagtgttatcaggaatttaaatttttctctttttcttgatcctattttgatagggatctacggttgcataagttggt |
117 |
Q |
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| T |
35529688 |
atatgcattaacacacggtgttctagtgttatcaggaatttaaatttttctctttttcttgatcctattttgatagggatctacggttgcataagttggt |
35529589 |
T |
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| Q |
118 |
atttgaagaagacttgttactagatggagctaaagttgcttactattctcacggaaaggtagcttcggttaaagatcggttttgctttaccttttttact |
217 |
Q |
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| T |
35529588 |
atttgaagaagacttgttactagatggagctgaagttgcttactattctcacggaaaggtagcttcggttaaagatgggttttgctttaccttttttaat |
35529489 |
T |
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| Q |
218 |
gactctcatcttttctg |
234 |
Q |
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|||| | |||||||||| |
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| T |
35529488 |
gactttaatcttttctg |
35529472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 35537159 - 35536944
Alignment:
| Q |
18 |
atatgcattaacacacggtgttctagtgttatcaggaatttaaatttttctctttttcttgatcctattttgatagggatctacggttgcataagttggt |
117 |
Q |
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|||||||||||||||||| |||||||| | |||||| |||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35537159 |
atatgcattaacacacggcgttctagtttcatcagggattttaattttgctctgattcttgatcctattttgatagggatgtacggttgcataagttggt |
35537060 |
T |
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| Q |
118 |
atttgaagaagacttgttactagatggagctaaagttgcttactattctcacggaaaggtagcttcggttaaagatcggttttgctttaccttttttact |
217 |
Q |
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| T |
35537059 |
atttgaagaagacgtgttaccagatggagctgaagtttcttactattctcacggaaaggtagcttcggttaaagat-ggttttgctttaccttttttaac |
35536961 |
T |
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| Q |
218 |
gactctcatcttttctg |
234 |
Q |
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| T |
35536960 |
ggctttcatcttttctg |
35536944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 35577416 - 35577209
Alignment:
| Q |
27 |
aacacacggtgttctagtgttatcaggaatttaaatttttctctttttcttgatcctattttgatagggatctacggttgcataagttggtatttgaaga |
126 |
Q |
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||||||| | |||||||| | | |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35577416 |
aacacacagcgttctagtttcaccaggaatttaaattttgctctttttcttgaacctattttgatagggatctacggttgcataagttggtatttgaaga |
35577317 |
T |
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| Q |
127 |
agacttgttactagatggagctaaagttgcttactattctcacggaaaggtagcttcggttaaagatcggttttgctttaccttttttactgactctcat |
226 |
Q |
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|||| ||||| ||||||| || ||||||||||||||||||| ||||||||||||| |||||||||| |||| | |||||||| ||| ||||| |||| |
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| T |
35577316 |
agacgtgttagaagatggaactgaagttgcttactattctcatggaaaggtagctttggttaaagatgggttcagttttaccttgttttatgactttcat |
35577217 |
T |
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| Q |
227 |
cttttctg |
234 |
Q |
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|||||||| |
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| T |
35577216 |
cttttctg |
35577209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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