View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_21 (Length: 532)
Name: NF1126_low_21
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 46909300 - 46908861
Alignment:
| Q |
1 |
aatcctgaagcagattaatgaaacacacaatccttgccaagaagttgaaattcattagaagatgaccctctcttaactctttgatgcttggaaaaggtgt |
100 |
Q |
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| T |
46909300 |
aatcctgaagcagattaatgaaacacacaatccttaccaagaagttgaaattcattagaagatgaccctctcttaactttttgatgcttggaaaaggtgt |
46909201 |
T |
|
| Q |
101 |
aatggaattctcattttgtggatatttggaaccgttgcactgaaaaatcacagagcactgtgcacgctgaaagtgcctatgatctttggcataatctgaa |
200 |
Q |
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| T |
46909200 |
aatggaattctcattttgtggatatttggaaccgttgcactgaaaaatcgcagagcactgtgcacgctgaaagtgcctatgatctttggcataatctgaa |
46909101 |
T |
|
| Q |
201 |
agattatttttcgaacttgatgtcagctattttacaagaattacattcttttccccaaggtgagaaaaatgtaaacaggtacttcaatcagttgaaggtt |
300 |
Q |
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| T |
46909100 |
agattatttttcgaacttgatgtcagctattttacaagaattacattcttttccccaaggtgagaaaaatgtaaacaggtacttcaatcagttgaaggtt |
46909001 |
T |
|
| Q |
301 |
atttgggaatatcttgaaaccataaggtctcttaacataccgccctcatgacataaggtctgaatatgtgtttataagtgggggtagttcttagccggtt |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909000 |
atttgggaatatctcgaaaccataaggtctcttaacataccgccctcatgacataaggtctgaatatgtgtttataagtgggggtagttcttagccggtt |
46908901 |
T |
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| Q |
401 |
ttataaggttggggaaat-ttttaacaaggacgacgctga |
439 |
Q |
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| T |
46908900 |
ttataaggttggggaaattttttaacaaggacgacgctga |
46908861 |
T |
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