View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_211 (Length: 227)
Name: NF1126_low_211
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_211 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 45970321 - 45970460
Alignment:
| Q |
24 |
gcaatagcaggaacaatattcactgtgaacctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttct |
123 |
Q |
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| T |
45970321 |
gcaatagcaggaacaatattcactgtgaacctaaatagcatgccgcgtaacataattttaatgtagcactattgataagagtttggttacagttatttct |
45970420 |
T |
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| Q |
124 |
tccttaataa-gttcacggtattaacatcctgaccaatgg |
162 |
Q |
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| T |
45970421 |
tccttaataaggttcacggtattaacatcctgaccaatgg |
45970460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 45974861 - 45974996
Alignment:
| Q |
28 |
tagcaggaacaatattcactgtgaacctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttcct |
127 |
Q |
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| T |
45974861 |
tagcaggaaaaaggttcaatgtgaacctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctccct |
45974960 |
T |
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| Q |
128 |
taataa-gttcacggtattaacatcctgaccaatgg |
162 |
Q |
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| T |
45974961 |
taataaggttcacggtattaacatcctgacctatgg |
45974996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 37525911 - 37525964
Alignment:
| Q |
157 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
210 |
Q |
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| T |
37525911 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37525964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 37588072 - 37588125
Alignment:
| Q |
157 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
210 |
Q |
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| T |
37588072 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37588125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 37618646 - 37618699
Alignment:
| Q |
157 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
210 |
Q |
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| T |
37618646 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37618699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 37690348 - 37690401
Alignment:
| Q |
157 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37690348 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37690401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 37794414 - 37794467
Alignment:
| Q |
157 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37794414 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37794467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 37787675 - 37787718
Alignment:
| Q |
165 |
tgaagagaagaagcaaagttacataaggcatgcaattcgggagt |
208 |
Q |
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| T |
37787675 |
tgaagagaagaagctaagttacatgaggcatgcaattcgagagt |
37787718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 14548434 - 14548487
Alignment:
| Q |
157 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14548434 |
caatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
14548487 |
T |
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