View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_217 (Length: 216)

Name: NF1126_low_217
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_217
NF1126_low_217
[»] chr7 (2 HSPs)
chr7 (5-192)||(27776882-27777069)
chr7 (61-125)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (61-112)||(41218921-41218972)
chr5 (60-124)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (62-124)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (62-124)||(15193146-15193208)
[»] chr4 (5 HSPs)
chr4 (62-124)||(18254024-18254086)
chr4 (61-125)||(51764235-51764299)
chr4 (63-116)||(22643579-22643632)
chr4 (60-124)||(22176935-22176999)
chr4 (60-124)||(23167441-23167505)
[»] chr3 (3 HSPs)
chr3 (62-124)||(53978164-53978226)
chr3 (60-124)||(8836233-8836297)
chr3 (60-124)||(55310168-55310232)
[»] chr1 (2 HSPs)
chr1 (62-124)||(49641073-49641135)
chr1 (60-124)||(52777903-52777967)
[»] chr2 (2 HSPs)
chr2 (61-125)||(19481630-19481694)
chr2 (61-125)||(11337765-11337829)
[»] chr6 (2 HSPs)
chr6 (60-125)||(34309881-34309946)
chr6 (61-100)||(21320833-21320870)
[»] scaffold0329 (1 HSPs)
scaffold0329 (60-124)||(11232-11296)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 27776882 - 27777069
Alignment:
Q  5 gaagaatttatgtttgagtcttttttacagaagtaagggtattttacattaactttcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaag 104  Q
    ||||||||||||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27776882 gaagaatttatgtttgagtctattttacaaaagaaatggtattttgcattaactttcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaag 27776981  T
Q  105 tatcaacatattctcaatgtgtcaaggaccttaatgtttcattatcatattcctatctctttttgtgcttatgctatttcacatgatg 192  Q
     |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  27776982 catcaacatattctcaatgtgtcaaggaccttaatatttcaatatcagattcctatctctttttgttcttatgctatttcacatgatg 27777069  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 19741093 - 19741157
Alignment:
Q  61 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 125  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||| ||||||    
T  19741093 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattcttaatgtg 19741157  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 41218972 - 41218921
Alignment:
Q  61 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaaca 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41218972 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaaca 41218921  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 26472136 - 26472200
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  26472136 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 26472200  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 27208 - 27146
Alignment:
Q  62 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  27208 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 27146  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 15193146 - 15193208
Alignment:
Q  62 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  15193146 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 15193208  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 18254024 - 18254086
Alignment:
Q  62 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  18254024 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 18254086  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 51764235 - 51764299
Alignment:
Q  61 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 125  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  51764235 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagaatcaacacattctcaatgtg 51764299  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 22643579 - 22643632
Alignment:
Q  63 tgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatatt 116  Q
    ||||||||||| |||||||||||||||  ||||||||| ||| |||||||||||    
T  22643579 tgtgttgaaactccccaacaaaatgggagggttgaaagaaagcatcaacatatt 22643632  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 22176999 - 22176935
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  22176999 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 22176935  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 23167505 - 23167441
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    ||||||||||| || |||||||||||||||   |||||||| ||| | ||||| |||||||||||    
T  23167505 tcttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacattctcaatgt 23167441  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 53978164 - 53978226
Alignment:
Q  62 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  53978164 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 53978226  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 8836233 - 8836297
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||||||||||| |||||    
T  8836233 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 8836297  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 55310168 - 55310232
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||||| ||||||||||||||    |||||||| ||| ||||| ||||||| |||||    
T  55310168 tcttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaatatattcttaatgt 55310232  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 49641135 - 49641073
Alignment:
Q  62 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||||||||| |||||    
T  49641135 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 49641073  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 52777903 - 52777967
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  52777903 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 52777967  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 19481630 - 19481694
Alignment:
Q  61 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 125  Q
    |||||||||| || || |||||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  19481630 cttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattctcaatgtg 19481694  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 11337765 - 11337829
Alignment:
Q  61 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 125  Q
    |||||||||| || || |||||||||||||  |||||||| ||| ||||||| ||||||||||||    
T  11337765 cttgtgttgagacgcctcaacaaaatggggctgttgaaagaaagcatcaacacattctcaatgtg 11337829  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 34309881 - 34309946
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgtg 125  Q
    ||||||||||| || || |||||||||||  | || ||||||||| |||||||||| |||||||||    
T  34309881 tcttgtgttgagactcctcaacaaaatggtattgtagaaaggaagcatcaacatatcctcaatgtg 34309946  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 21320833 - 21320870
Alignment:
Q  61 cttgtgttgaaacaccccaacaaaatggggtggttgaaag 100  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  21320833 cttgtgttgaaac--cccaacaaaatggggtggttgaaag 21320870  T

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Target: scaffold0329 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 11232 - 11296
Alignment:
Q  60 tcttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagtatcaacatattctcaatgt 124  Q
    |||||||||||||| ||||||||||||||    || ||||||||  | |||||||||||||||||    
T  11232 tcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgt 11296  T

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