View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_219 (Length: 214)
Name: NF1126_low_219
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_219 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26456012 - 26456125
Alignment:
| Q |
1 |
agcacgattttatccatgaacttggtgactgcaaacaaacgctccaaannnnnnncttcctcaagctctaaaactcccttcgttttttcacacttatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26456012 |
agcacgattttatccatgaacttggtgactgcaaacaaacgctccaaatttttttcttcctcaagctctaaaactcccttcgttttttcacacttatcaa |
26456111 |
T |
|
| Q |
101 |
taacagtataaacc |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26456112 |
taacagtataaacc |
26456125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 26456380 - 26456413
Alignment:
| Q |
14 |
ccatgaacttggtgactgcaaacaaacgctccaa |
47 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
26456380 |
ccatgaacttggtgactgcaaataaacgctccaa |
26456413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University