View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_221 (Length: 210)

Name: NF1126_low_221
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_221
NF1126_low_221
[»] chr4 (2 HSPs)
chr4 (45-103)||(11438344-11438402)
chr4 (36-83)||(27847981-27848028)
[»] chr3 (1 HSPs)
chr3 (30-78)||(37735471-37735519)
[»] chr2 (1 HSPs)
chr2 (30-78)||(36011539-36011587)
[»] scaffold0078 (1 HSPs)
scaffold0078 (26-78)||(18983-19034)
[»] chr1 (1 HSPs)
chr1 (46-96)||(42245723-42245772)
[»] chr7 (1 HSPs)
chr7 (46-79)||(11502194-11502227)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 11438344 - 11438402
Alignment:
Q  45 ttttttatgaatttatgaacatgattgatgaagatgaaggaagaggaagatggaagaag 103  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11438344 ttttttatgaatttatgaatatgattgatgaagatgaaggaagaggaagatggaagaag 11438402  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 27848028 - 27847981
Alignment:
Q  36 ggtatgaagttttttatgaatttatgaacatgattgatgaagatgaag 83  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27848028 ggtatgaagttttttatgaatttatgaatatgattgatgatgatgaag 27847981  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 37735519 - 37735471
Alignment:
Q  30 tggattggtatgaagttttttatgaatttatgaacatgattgatgaaga 78  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37735519 tggattggaatgaagttttttatgaatttatgaacatgattgatgaaga 37735471  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 36011539 - 36011587
Alignment:
Q  30 tggattggtatgaagttttttatgaatttatgaacatgattgatgaaga 78  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  36011539 tggattggaatgaagttttgtatgaatttatgaacatgattgatgaaga 36011587  T

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Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 19034 - 18983
Alignment:
Q  26 tttctggattggtatgaagttttttatgaatttatgaacatgattgatgaaga 78  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  19034 tttctggattggaatgaa-ttttttatgaatttatgaacatgatagatgaaga 18983  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 42245723 - 42245772
Alignment:
Q  46 tttttatgaatttatgaacatgattgatgaagatgaaggaagaggaagatg 96  Q
    ||||||||||  |||||| |||||||||||||||||| |||||||||||||    
T  42245723 tttttatgaagatatgaatatgattgatgaagatgaa-gaagaggaagatg 42245772  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 11502194 - 11502227
Alignment:
Q  46 tttttatgaatttatgaacatgattgatgaagat 79  Q
    |||||||||||||||||| |||||||||||||||    
T  11502194 tttttatgaatttatgaatatgattgatgaagat 11502227  T

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