View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_231 (Length: 202)
Name: NF1126_low_231
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_231 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 3e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 45970470 - 45970321
Alignment:
| Q |
33 |
agcataggtaccattggtcaggatgttaataccgtgaac-ttattaaggaagaaatcactgttaccaaactcttatcaatagcgctacattaaaattatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45970470 |
agcataggtaccattggtcaggatgttaataccgtgaaccttattaaggaagaaataactgtaaccaaactcttatcaatagtgctacattaaaattatg |
45970371 |
T |
|
| Q |
132 |
ttacgcgccatgctatttaggttcacagtgaatattgttcctgctattgc |
181 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45970370 |
ttacgcggcatgctatttaggttcacagtgaatattgttcctgctattgc |
45970321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 45975006 - 45974861
Alignment:
| Q |
33 |
agcataggtaccattggtcaggatgttaataccgtgaac-ttattaaggaagaaatcactgttaccaaactcttatcaatagcgctacattaaaattatg |
131 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||| || | |||||| |||| |||||||| || |
|
|
| T |
45975006 |
agcataggtgccataggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctg |
45974907 |
T |
|
| Q |
132 |
ttacgcgccatgctatttaggttcacagtgaatattgttcctgcta |
177 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| || ||||||||| |
|
|
| T |
45974906 |
ttacgcgacatgctatttaggttcacattgaacctttttcctgcta |
45974861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University