View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_24 (Length: 521)
Name: NF1126_low_24
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 22 - 506
Target Start/End: Complemental strand, 36807433 - 36806941
Alignment:
| Q |
22 |
catcatca-ggattaacataaactgcacaagcgagcaagacaccgcattttcacacttgtcacaccaagttagtagatgattattttgttgatcttttga |
120 |
Q |
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|||||||| |||||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36807433 |
catcatcatggattaacttaaactgcacaagcgagcaagatatcacattttcacacttgtcacaccaagttagtagatgattattttgttgatcttttgg |
36807334 |
T |
|
| Q |
121 |
ctagatctctattatttctcaatattcgacagttagagagatacactcgtaaaatcaaggacccaaattatttgtagtcattttttcacgtaattgcacg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
36807333 |
ctagatctctattatttctcaatattcgacagttagagagatacactcgtaaaatcaaggacccagattatttgtagtcgttttttcacgtaattgcaca |
36807234 |
T |
|
| Q |
221 |
caatagttgatctcgacagttggtttaaggtcggccggtccagattacacaatcaacttcttatagttaaatgacctcttttgttgatttaagagcgaat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36807233 |
caatagttgatctcgacagttggtttaaggtcggccggtccagattacacaatcaacttcttatagttaaatgacctcttttgttgatttaaaagcgaat |
36807134 |
T |
|
| Q |
321 |
tgatttccccaaatccaatatcttggctcaattggagtgtagaaac--atactagtttg-----tgnnnnnnnnnnngtgcgtgagaaggctcatgatcc |
413 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||| |||||| |
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| T |
36807133 |
tgatttccccaaatccaatatcttggctcaattgaagtgtagaaacatatactagtttgtattttttttttttttttgtgcgtgagaaggctcgtgatcc |
36807034 |
T |
|
| Q |
414 |
aaaaagatcaaactaagaggcttaaattctccacgacttttaaacaccttagttacttgtatacgacttttaaacaccttagttaattgtaat |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36807033 |
aaaaagatcaaactaagaggcttaaattctccacgacttttaaacaccttagttacttgtatacgacttttaaacaccttagttaattgtaat |
36806941 |
T |
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