View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_26 (Length: 520)
Name: NF1126_low_26
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Original strand, 30788883 - 30789382
Alignment:
| Q |
11 |
cagagatggtctctaactggaatgacagcacttgttaccggtggcactcgtggaatcgggttttcatctttctccttttccgttatttcattgtttatct |
110 |
Q |
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| T |
30788883 |
cagagatggtctctaactggaatgacagcacttgttaccggtggcactcgtggaatcgggttttcatctttctccttttcccttatttcattgtttatct |
30788982 |
T |
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| Q |
111 |
tatcttcaacaccctgcatcattattcatatgtagtctttattttgatctagccaaaaatacttcattatcttttacactctccgttttaagattagtgt |
210 |
Q |
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| T |
30788983 |
tatcttcaacaccctgcatcattattcatatgtagtctttattttgatctagccaaaaatacttcattatcttttacactctccgttttaagattagtgt |
30789082 |
T |
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| Q |
211 |
cgtttaaaggtttttgcacacggactaacactgcaacataattgagatctagttacatttgaacaattgttaggtattactaaagagctttagtaacatt |
310 |
Q |
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| T |
30789083 |
cgtttaaaggtttttgcacacggactaacactgcaacataattgagatctagttacatttggacaattgttaggtattactaaagagctttagtaacatt |
30789182 |
T |
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| Q |
311 |
ttaccaaagagatgatacttttattaagaatagattttaatccatccattcatttgacacattgtttaggcatgccatagtgaatgatcttgttacattt |
410 |
Q |
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| T |
30789183 |
ttaccaaagagatgatacttttattaagaaaagattttaatccatccattcatttgacacattgtttaggcatgccatagtgaatgatcttgttgcattt |
30789282 |
T |
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| Q |
411 |
ggtgctgctgtacacacttgttcaaggactgaatcagagctcaataagtgtttacaagaatggcaaagtaagggattttcggttactgggtcggtctgtg |
510 |
Q |
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| T |
30789283 |
ggtgctgctgtacacacttgttcaaggactgaatcagagctcagtaagtgtttacaagaatggcaaagtaagggattttcggttactgggtcggtctgtg |
30789382 |
T |
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