View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_28 (Length: 514)
Name: NF1126_low_28
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_28 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 32099368 - 32099711
Alignment:
| Q |
30 |
tttacaaaggaagaaattagcatgcagatcaaagattgtttttatacatttatagaattgaaatatttggatctcactgatctcatattttccaacacat |
129 |
Q |
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| T |
32099368 |
tttacaaaggaagaaattagcatgcagatcaaagattgtttttatacatttatagaattgaaatatttggatctcactgatctcatattttccaacacat |
32099467 |
T |
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| Q |
130 |
atatgttagtgaagttagaaaagggagacagaaggttacgctagtcgctaattggaattgttcaaggcaacacatttgataaattatatttgacagcttt |
229 |
Q |
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| T |
32099468 |
atatgttagtgaagttagaaaagggagacagaaggttacgctagtcgctaataggaattgttcaaggcaacacatttgataaattatatttgacagcttt |
32099567 |
T |
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| Q |
230 |
caataaactactatatattctgcatggctgccactatgttgggaaaatactacatttgattgccggagccatagtcaccc---nnnnnnnnttataattt |
326 |
Q |
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| T |
32099568 |
caataaactactatatattctgcatggctgccactatgttgggaaaatactacatctgattgccggagccatagtcacccaaaaaaaaaaattataattt |
32099667 |
T |
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| Q |
327 |
agtacatacatatatattgtgatcatctattaattaactaagtg |
370 |
Q |
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| T |
32099668 |
agtacatacatatatattgtgatcatctattaattaactaagtg |
32099711 |
T |
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Target: scaffold0019 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 37239 - 37174
Alignment:
| Q |
363 |
actaagtgcttgtttggttcaacatccactttgttaatatcacgtctcaatatttattttcctttg |
428 |
Q |
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| T |
37239 |
actaagtgcttgtttggttcaacatccactttgttaatatcgcgtctcaatacttattttcctttg |
37174 |
T |
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