View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_3 (Length: 842)
Name: NF1126_low_3
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 798; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 29 - 834
Target Start/End: Original strand, 3056580 - 3057385
Alignment:
| Q |
29 |
aactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggattatccattgtgacataaagcctcaaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056580 |
aactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggattatccattgtgacataaagcctcaaaa |
3056679 |
T |
|
| Q |
129 |
catactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagagga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056680 |
catactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagagga |
3056779 |
T |
|
| Q |
229 |
acaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056780 |
acaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcat |
3056879 |
T |
|
| Q |
329 |
gtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3056880 |
gtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttatgtgcatt |
3056979 |
T |
|
| Q |
429 |
ggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagacca |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056980 |
ggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagacca |
3057079 |
T |
|
| Q |
529 |
aacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataag |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057080 |
aacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataag |
3057179 |
T |
|
| Q |
629 |
tctgtaagctaagattggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccg |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057180 |
tctgtaagctaagattggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccg |
3057279 |
T |
|
| Q |
729 |
taatatttgcatttatgtttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgtacccctcaatcatatgttgtt |
828 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057280 |
taatatttgcatttatttttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgtacccctcaatcatatgttgtt |
3057379 |
T |
|
| Q |
829 |
catctc |
834 |
Q |
| |
|
|||||| |
|
|
| T |
3057380 |
catctc |
3057385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 29 - 665
Target Start/End: Original strand, 3035712 - 3036348
Alignment:
| Q |
29 |
aactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggattatccattgtgacataaagcctcaaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
3035712 |
aactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggatcattcattgtgacataaagcctcaaaa |
3035811 |
T |
|
| Q |
129 |
catactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagagga |
228 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3035812 |
catactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagttgttgaacatgaatcaaagcaaaaccaacaccggcataagagga |
3035911 |
T |
|
| Q |
229 |
acaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcat |
328 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3035912 |
ataaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcat |
3036011 |
T |
|
| Q |
329 |
gtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcatt |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
3036012 |
gtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaatgatggtgctttagatgcatt |
3036111 |
T |
|
| Q |
429 |
ggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagacca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3036112 |
ggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatgtcttagacca |
3036211 |
T |
|
| Q |
529 |
aacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataag |
628 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3036212 |
accatgagaaatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcaccaattagtattcaatattctctaaattaataag |
3036311 |
T |
|
| Q |
629 |
tctgtaagctaagattggcaacttgtgctaatacttg |
665 |
Q |
| |
|
| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
3036312 |
ttgggaagcaaagattggcaacttgtgctaatacttg |
3036348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 29 - 629
Target Start/End: Complemental strand, 3070332 - 3069732
Alignment:
| Q |
29 |
aactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggattatccattgtgacataaagcctcaaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
3070332 |
aactaaggctagaacttgcaataggtatagctagaggacttgtgtatttacatgaagagtgcatcactaggatcatccattgtgacataaagcctcagaa |
3070233 |
T |
|
| Q |
129 |
catactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagagga |
228 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070232 |
catactccttgatgattacttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaaagcaaaaccaacactggcataagagga |
3070133 |
T |
|
| Q |
229 |
acaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070132 |
acaaaagggtatgttgcacttgaatggtttaaaaacatgcctatcacagctaaggttgatgtgtatagttatggtgtagtgctacttgagataatttcat |
3070033 |
T |
|
| Q |
329 |
gtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3070032 |
gtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcatt |
3069933 |
T |
|
| Q |
429 |
ggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagacca |
528 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| || |
|
|
| T |
3069932 |
ggttgagggtgacaatgaggcattggaggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatgcatgtcttagatca |
3069833 |
T |
|
| Q |
529 |
aacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataag |
628 |
Q |
| |
|
| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3069832 |
accatgagaaatgtgatacatatgcttgaaggtactgttgaagtgcaagctccgttaaacccctcaccgtttagtattcaatattctctaaattaataag |
3069733 |
T |
|
| Q |
629 |
t |
629 |
Q |
| |
|
| |
|
|
| T |
3069732 |
t |
3069732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 319 - 560
Target Start/End: Complemental strand, 3049081 - 3048840
Alignment:
| Q |
319 |
ataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctt |
418 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||| || |||||||| ||||||||||| ||||||||||| ||| | |
|
|
| T |
3049081 |
ataatttcatgtagaagatgtgttgaagaaatggatcaagaaaatgaatacaaagctatcttaactgaatgggcttatgactgctacaaagaaggtattc |
3048982 |
T |
|
| Q |
419 |
taggtgcattggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccata |
518 |
Q |
| |
|
||| | | |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
3048981 |
tagatcccttggttgagggtgacaatgaggcattgaaggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatccata |
3048882 |
T |
|
| Q |
519 |
tcttagaccaaacatgagagatgtggtacatatgcttgaagg |
560 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
3048881 |
tcttagaccaaccatgagaaatgtgatacatatgcttgaagg |
3048840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 551 - 660
Target Start/End: Complemental strand, 3048436 - 3048326
Alignment:
| Q |
551 |
tgcttgaaggtactgttgaagtgcaagttccaccat--acccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggca |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
3048436 |
tgcttgaaggtactgttgaagtgcaagttccaccatacacccttcaccaattagtattgaatattctctaaattaataactttgtaag-gaagattggca |
3048338 |
T |
|
| Q |
649 |
acttgtgctaat |
660 |
Q |
| |
|
||||||||||| |
|
|
| T |
3048337 |
gcttgtgctaat |
3048326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 680 - 791
Target Start/End: Original strand, 3036322 - 3036432
Alignment:
| Q |
680 |
aagattgacaacttgtgctgatacttgttgtgctctttt-aagtgtaccgt--aatatttgcatttatgtttgtgtatcaagatgttgtttccatattat |
776 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3036322 |
aagattggcaacttgtgctaatacttgc---gctctttttaagtgtaccgtgtaatatttgcatttatgtttgtgt-tcaagatgtgatttccatattaa |
3036417 |
T |
|
| Q |
777 |
ggtaggttccaatat |
791 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
3036418 |
ggtaggtcccaatat |
3036432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 45 - 275
Target Start/End: Original strand, 21457501 - 21457736
Alignment:
| Q |
45 |
tgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggattatcca-----ttgtgacataaagcctcaaaacatactcctgg |
139 |
Q |
| |
|
||||||||| |||||||||| ||| || | |||||||||||||| ||||| |||||| ||| | |||||||||||||||||||||||||| | | | |
|
|
| T |
21457501 |
tgcaatagggatagctagagtactggtat-tttacatgaagagtccatcaataggatcatctattgacttgtgacataaagcctcaaaacatacccattg |
21457599 |
T |
|
| Q |
140 |
atgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggta |
239 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||| ||| |||||||||||| |||||| |||| |||| |||| |
|
|
| T |
21457600 |
atgattacttcaatgcaagaatttctgactttggattagcaaaattgttgaacatgaatttgagcgaaaccaacactgccataaggggaagaaaatggta |
21457699 |
T |
|
| Q |
240 |
tgttgcacttgaatgg-tttaaaaacatgcctatcac |
275 |
Q |
| |
|
| || ||||||||||| ||||||||||||| |||||| |
|
|
| T |
21457700 |
tctttcacttgaatggttttaaaaacatgcatatcac |
21457736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 28445438 - 28445582
Alignment:
| Q |
103 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaa |
202 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| || |||||| | | ||||||||||||||| |||||||||||||| ||||| ||| || ||||||| |
|
|
| T |
28445438 |
atccattgcgatataaagccacaaaatatacttctagatgatcaatacaatgcaagaatttcagattttggattagcaaagttattgttgattaatcaaa |
28445537 |
T |
|
| Q |
203 |
gcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
247 |
Q |
| |
|
|| | ||| | ||||| ||||||||||| || || |||||||||| |
|
|
| T |
28445538 |
gccataccgaaactggaataagaggaactaagggatatgttgcac |
28445582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 28488045 - 28488189
Alignment:
| Q |
103 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaa |
202 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| || |||||| | | ||||||||| ||||| |||||||||||| | ||| | ||| || ||||||| |
|
|
| T |
28488045 |
atccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagctattgttgattaatcaaa |
28488144 |
T |
|
| Q |
203 |
gcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
247 |
Q |
| |
|
|| | || | ||||| || ||||||||||||||||||||||||| |
|
|
| T |
28488145 |
gccacactgaaactggaattagaggaacaaaagggtatgttgcac |
28488189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 28466284 - 28466428
Alignment:
| Q |
103 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaa |
202 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| || |||||| | | ||||||||| ||||| |||||||||||| | ||| | ||| || ||||||| |
|
|
| T |
28466284 |
atccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggattatcaaagctattgttgattaatcaaa |
28466383 |
T |
|
| Q |
203 |
gcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
247 |
Q |
| |
|
|| | || | ||||| || |||||||| |||||||||||||||| |
|
|
| T |
28466384 |
gccacactgaaactggaattagaggaaccaaagggtatgttgcac |
28466428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 28437989 - 28438041
Alignment:
| Q |
103 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgc |
155 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||| ||| |||||| |
|
|
| T |
28437989 |
atccattgtgacataaagccacaaaacatacttctagatgatgattacaatgc |
28438041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 28445708 - 28445739
Alignment:
| Q |
376 |
attttaactgattgggcttatgattgctacaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28445708 |
attttaactgattgggcttatgattgctacaa |
28445739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 28488302 - 28488343
Alignment:
| Q |
363 |
tgaagacaaagcaattttaactgattgggcttatgattgcta |
404 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28488302 |
tgaagaaaaagggattttaactgattgggcttatgattgcta |
28488343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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