View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_33 (Length: 501)
Name: NF1126_low_33
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 51 - 491
Target Start/End: Original strand, 43862117 - 43862551
Alignment:
| Q |
51 |
gacattggaggtagaaatgttaatgatgttgcaggtagaaattaattaacaatattatgatccttgtacttgaaaaacattctttagatgtcatggaatt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43862117 |
gacattggaggtagaaatgttaatgatgttgcaggtagaaattaattaacaatattatgatccttgtacttaaaaaacattctttagatgtcatggaatt |
43862216 |
T |
|
| Q |
151 |
tagcatggatcgatgaaaattaatttgaataatgttgattgtacttttgcagtttgatgaaactagcttgctgttcaggcatgcatgcagagattgacca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43862217 |
-agcatggatcgatgaaaattaatttgaataatgttgattgtacttttgcagtttgatgaaactagctagctgttcaggcatgcatgcagagattgacca |
43862315 |
T |
|
| Q |
251 |
gcctttaatccacatgcagctgcttacaagattttaatttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgtt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862316 |
gcctttaatccacatgcagctgcttacaagattttaatttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgtt |
43862415 |
T |
|
| Q |
351 |
taactttttcatggtcttcgagaaattttagnnnnnnnnnnnaatatttttaaatataataaaaaatagctggacttgcgtgtgatgaaattctatgaaa |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862416 |
taactttttcatggtcttcgagaaattttag-ttttttttttaatatttttaaatataataaaaaatagctggacttgcgtgtgatgaaattctatgaaa |
43862514 |
T |
|
| Q |
451 |
attgtccgtctttgtatatatatgctttcattttgtctgtg |
491 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
43862515 |
attgtccgtctttg----tatatgctttcattttgtgtgtg |
43862551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University