View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_35 (Length: 490)
Name: NF1126_low_35
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Complemental strand, 2628202 - 2627726
Alignment:
| Q |
9 |
gtcgggtgctgattggtggctgtgttttggtctttgccttgattgtctgtctgctgttatgcctttgcaattgagtccctcaggatgccaggtctgtagt |
108 |
Q |
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| T |
2628202 |
gtcgggtgctgattggtggctgtgttttggtctttgccttgattgtctgtctgttgttacgcctttgcaattgagtccctcaggatgccaggtctgtagt |
2628103 |
T |
|
| Q |
109 |
ggtttgtgtttaggtgatttgcgttttcttttttctaagagccagctgttaattctgtgaccctctaa---ggtgttttggggttgctgtatcagcagtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2628102 |
ggtttgtgtttaggtgatttgcgttttcttttttctaagagccagctgttaattctgtgaccctctaaggtggtgttttggggttgctgtatcagcagtt |
2628003 |
T |
|
| Q |
206 |
ttagctacaggggcagttgtttttggtagttcttagttgtttttctgctattcagaattttatttgtatcttcaatctcaagcgcagtttgtgctcaagt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628002 |
ttagctacaggggcagttgtttttggtagttcttagttgtttttctgctattcagaattttatttgtatcttcaatctcaagcgcagtttgtgctcaagt |
2627903 |
T |
|
| Q |
306 |
gttttcaataaaagtttagctattnnnnnnnnnnnnntagag---------tttatgctgtgaaaacaacaccttatcacataaaaaaggcactggtaaa |
396 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627902 |
gttttcaataaaagtttagctattaaaaaacaaaaaatagaggtagaattttttatgctgtgaaaacaacaccttatcacataaaaaaggcactggtaaa |
2627803 |
T |
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| Q |
397 |
gcacaaggatgcagaagaaagatggagggagattattgtcttgcgtagtaacgcagaggtatgttcatgtggtgcag |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2627802 |
gcacaaggatgcagaagaaagatggagggagattattgtcttgcgtagtaatgcagaggtatgttcatgtggtgcag |
2627726 |
T |
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