View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_39 (Length: 486)
Name: NF1126_low_39
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 186 - 457
Target Start/End: Complemental strand, 1418744 - 1418495
Alignment:
| Q |
186 |
caatttttagcttttaaacaattcaagtcggttcaacaattcatcaaatatgaaccgattccgaacattatattatactaccttttaaacaattcatata |
285 |
Q |
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| T |
1418744 |
caatttttagcttttaaacaattcaagtcggttcaacaattcatcaaatatgaaccggttccgaacattatattata---------------------ta |
1418666 |
T |
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| Q |
286 |
catacgtaaatggatctcttttataaacaacaaattactatctttcaaacaaagattaaagttcagtataacataacatcatatataaatacacgacaat |
385 |
Q |
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| T |
1418665 |
gatacgtaaatggatctcttttataaacaacaaattactatctttgaaacaaagattaaagttcagtataacataacatcatatataaatacacgacaat |
1418566 |
T |
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| Q |
386 |
atccctcaatcatgtattatatgnnnnnnnnnttcataactaataattaatcaaaacatatataattgtttt |
457 |
Q |
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| T |
1418565 |
atccctcaatcatgtattatatgaaaaaaaaa-tcacaactaataattaatcaaaacatatataattgtttt |
1418495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 1418955 - 1418893
Alignment:
| Q |
41 |
gatgaatatagtcagtcatatggtgtcaaaggcaatgtgcattgtgaaagaaatacctaaaat |
103 |
Q |
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| T |
1418955 |
gatgaatatagtcagtcatatggtgtcaaaggcaatgtgcattgtgaaagaaagacctaaaat |
1418893 |
T |
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