View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_41 (Length: 484)

Name: NF1126_low_41
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_41
NF1126_low_41
[»] chr2 (22 HSPs)
chr2 (55-472)||(16576071-16576498)
chr2 (103-335)||(38576810-38577041)
chr2 (192-377)||(16863386-16863570)
chr2 (152-377)||(35370327-35370552)
chr2 (229-347)||(2248934-2249052)
chr2 (191-303)||(9050085-9050197)
chr2 (182-268)||(17606579-17606665)
chr2 (101-315)||(34176695-34176912)
chr2 (180-289)||(28282667-28282776)
chr2 (244-339)||(34176610-34176705)
chr2 (205-300)||(38333818-38333913)
chr2 (233-301)||(34176882-34176948)
chr2 (55-292)||(9050119-9050356)
chr2 (231-271)||(2909857-2909897)
chr2 (224-303)||(13712743-13712822)
chr2 (180-303)||(38576726-38576840)
chr2 (198-312)||(25606360-25606474)
chr2 (232-285)||(35373728-35373781)
chr2 (214-339)||(13712902-13713029)
chr2 (224-300)||(35371117-35371193)
chr2 (198-261)||(13784444-13784507)
chr2 (254-318)||(40374123-40374184)
[»] chr5 (29 HSPs)
chr5 (165-303)||(2243250-2243388)
chr5 (192-333)||(40483655-40483795)
chr5 (181-303)||(973114-973236)
chr5 (190-336)||(39808191-39808337)
chr5 (184-334)||(17736852-17737001)
chr5 (190-303)||(17736713-17736826)
chr5 (190-335)||(22780303-22780448)
chr5 (180-292)||(7215417-7215529)
chr5 (252-334)||(972801-972883)
chr5 (55-120)||(2243310-2243375)
chr5 (177-313)||(41264366-41264503)
chr5 (190-265)||(17739907-17739982)
chr5 (159-303)||(7215224-7215368)
chr5 (182-299)||(41264536-41264653)
chr5 (205-289)||(2822597-2822681)
chr5 (231-307)||(14138544-14138620)
chr5 (216-276)||(40483880-40483940)
chr5 (251-318)||(37077641-37077707)
chr5 (230-300)||(22780174-22780244)
chr5 (231-316)||(972874-972959)
chr5 (191-303)||(7982214-7982327)
chr5 (230-303)||(37077763-37077836)
chr5 (159-286)||(7113541-7113669)
chr5 (237-288)||(39730312-39730363)
chr5 (56-118)||(22780339-22780401)
chr5 (229-274)||(26105493-26105538)
chr5 (202-278)||(5205509-5205585)
chr5 (233-348)||(7982382-7982497)
chr5 (103-145)||(17736796-17736838)
[»] chr7 (25 HSPs)
chr7 (101-339)||(27651380-27651616)
chr7 (193-303)||(23944079-23944189)
chr7 (229-303)||(34891536-34891610)
chr7 (199-303)||(32138854-32138958)
chr7 (229-377)||(43208674-43208823)
chr7 (180-303)||(42012804-42012926)
chr7 (248-338)||(4674876-4674966)
chr7 (232-310)||(33192336-33192414)
chr7 (153-348)||(757864-758062)
chr7 (154-249)||(31152823-31152919)
chr7 (154-303)||(31171384-31171535)
chr7 (153-274)||(32962311-32962434)
chr7 (231-284)||(3191567-3191620)
chr7 (189-273)||(33362370-33362454)
chr7 (55-138)||(32138880-32138963)
chr7 (165-300)||(34891371-34891506)
chr7 (233-283)||(8354394-8354444)
chr7 (280-377)||(32988567-32988665)
chr7 (254-303)||(29152350-29152399)
chr7 (251-303)||(8900670-8900722)
chr7 (204-286)||(22593545-22593624)
chr7 (205-289)||(44754928-44755012)
chr7 (236-333)||(29152493-29152587)
chr7 (84-137)||(8900673-8900726)
chr7 (238-290)||(31152738-31152790)
[»] chr1 (35 HSPs)
chr1 (153-337)||(38839582-38839765)
chr1 (180-303)||(49897873-49897996)
chr1 (205-377)||(52432590-52432762)
chr1 (195-303)||(68100-68208)
chr1 (165-303)||(3232131-3232270)
chr1 (180-278)||(3367810-3367908)
chr1 (184-276)||(7104295-7104387)
chr1 (189-337)||(34601568-34601715)
chr1 (229-303)||(46080974-46081048)
chr1 (153-292)||(5500739-5500878)
chr1 (189-303)||(52432836-52432950)
chr1 (233-318)||(3231946-3232031)
chr1 (55-265)||(67967-68178)
chr1 (191-318)||(15321029-15321156)
chr1 (180-303)||(44330466-44330589)
chr1 (248-318)||(2534433-2534503)
chr1 (270-346)||(45136757-45136833)
chr1 (53-145)||(46080962-46081054)
chr1 (55-131)||(52432666-52432742)
chr1 (180-303)||(10775166-10775289)
chr1 (190-303)||(24874601-24874715)
chr1 (206-307)||(35956982-35957083)
chr1 (165-246)||(41148570-41148651)
chr1 (281-334)||(42819471-42819524)
chr1 (198-286)||(10775037-10775125)
chr1 (205-303)||(24873768-24873867)
chr1 (157-274)||(34601366-34601484)
chr1 (225-303)||(42819624-42819702)
chr1 (180-268)||(12145005-12145093)
chr1 (244-334)||(46080821-46080910)
chr1 (224-285)||(7749024-7749085)
chr1 (84-137)||(10775162-10775215)
chr1 (63-115)||(3231979-3232031)
chr1 (270-318)||(3367746-3367794)
chr1 (205-261)||(7104215-7104271)
[»] chr8 (19 HSPs)
chr8 (231-334)||(34695801-34695904)
chr8 (153-303)||(29969101-29969252)
chr8 (201-303)||(35574610-35574712)
chr8 (201-331)||(37010315-37010445)
chr8 (196-358)||(7590280-7590442)
chr8 (216-320)||(6630524-6630628)
chr8 (207-334)||(7405534-7405661)
chr8 (188-303)||(32166592-32166707)
chr8 (224-301)||(12736059-12736136)
chr8 (198-261)||(29093581-29093644)
chr8 (275-347)||(39280912-39280984)
chr8 (55-255)||(32166629-32166825)
chr8 (180-278)||(6630331-6630429)
chr8 (245-318)||(30547336-30547409)
chr8 (166-306)||(35574743-35574884)
chr8 (156-377)||(12782311-12782527)
chr8 (166-278)||(6803876-6803989)
chr8 (233-337)||(31475009-31475111)
chr8 (236-290)||(33897753-33897807)
[»] chr6 (10 HSPs)
chr6 (156-290)||(32047190-32047325)
chr6 (169-303)||(32342603-32342737)
chr6 (198-318)||(20067904-20068024)
chr6 (153-257)||(32047039-32047144)
chr6 (233-292)||(23577165-23577224)
chr6 (153-303)||(20068089-20068239)
chr6 (257-317)||(20206481-20206541)
chr6 (257-317)||(22100504-22100564)
chr6 (231-286)||(7556116-7556171)
chr6 (281-337)||(32046954-32047010)
[»] chr4 (12 HSPs)
chr4 (154-303)||(22050855-22051005)
chr4 (84-273)||(25062352-25062542)
chr4 (230-303)||(15131574-15131647)
chr4 (201-327)||(20512797-20512923)
chr4 (180-303)||(25062493-25062616)
chr4 (229-278)||(22050725-22050774)
chr4 (60-125)||(15131574-15131639)
chr4 (231-303)||(20512668-20512740)
chr4 (237-300)||(4115389-4115452)
chr4 (233-292)||(25234202-25234261)
chr4 (229-303)||(54000045-54000119)
chr4 (254-314)||(44591971-44592031)
[»] chr3 (18 HSPs)
chr3 (166-303)||(39341202-39341340)
chr3 (197-318)||(13283806-13283927)
chr3 (153-337)||(7938035-7938220)
chr3 (153-258)||(2562969-2563073)
chr3 (210-339)||(54437604-54437733)
chr3 (152-303)||(54437809-54437961)
chr3 (254-348)||(7641806-7641900)
chr3 (191-288)||(20519256-20519353)
chr3 (191-307)||(48646411-48646526)
chr3 (198-332)||(34762089-34762222)
chr3 (229-377)||(46303299-46303447)
chr3 (238-318)||(21570356-21570436)
chr3 (233-301)||(42091793-42091861)
chr3 (158-260)||(51260553-51260654)
chr3 (239-318)||(6138487-6138566)
chr3 (201-318)||(20519434-20519556)
chr3 (181-285)||(45228277-45228378)
chr3 (221-303)||(34761943-34762025)
[»] scaffold0136 (1 HSPs)
scaffold0136 (166-270)||(36907-37012)
[»] scaffold1743 (1 HSPs)
scaffold1743 (236-318)||(772-853)
[»] scaffold0564 (2 HSPs)
scaffold0564 (252-377)||(5456-5582)
scaffold0564 (230-267)||(5298-5335)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 55 - 472
Target Start/End: Complemental strand, 16576498 - 16576071
Alignment:
Q  55 agatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaaattctatccgtggtgcc 154  Q
    ||||||||||  |||| | ||||| |||||||||||||||||||| | |||| ||||||||| ||| ||||| |||| |||||| ||||||||||| |||    
T  16576498 agatggagattgcatgttaaatgaaggatatgaagatgtttgttgtttttgaaatgaaaatgataaatgattgtaag-aaaaaactctatccgtggggcc 16576400  T
Q  155 tacattaccacttgatgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 254  Q
    ||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16576399 tacgttaccccttgatgaattgggttaatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 16576300  T
Q  255 tgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaattacgccaat 354  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||||||||||| ||||||||||||||||||  |||||||||||||    
T  16576299 tgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaagataatttttctttgatagggctaaattacgccaat 16576200  T
Q  355 tcatctagaggtaatgtagaaaatatcattatctacatgggaagttggtcacttatttttcttcttaa-----------acatatttttggtgtgaacca 443  Q
    | |||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  16576199 tgatctaaggataatgtagaaaatatcattatctacatgggaagttggtcacttatttttcttcttaaacatgtcttaaacatatttttggtgtgaacca 16576100  T
Q  444 aatatcttttatacgtaactatagagaat 472  Q
    |||||||||||| |  |||||||||||||    
T  16576099 aatatcttttatgcacaactatagagaat 16576071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 103 - 335
Target Start/End: Original strand, 38576810 - 38577041
Alignment:
Q  103 ttgagatgaaaatggtaattgattataaggaaaaaattctatccgtggtgcctacattaccacttgatgaattgggttaatttacttctaatgataagta 202  Q
    |||||||||||||||||| ||||| |||| |||||  | ||||  ||  |||||||||||| ||| |||||||||| ||||||||| ||||||| || ||    
T  38576810 ttgagatgaaaatggtaactgattgtaagaaaaaacct-tatcgatgaggcctacattacccctttatgaattggggtaatttactcctaatgacaaata 38576908  T
Q  203 tgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaaga 302  Q
    ||||| |||| ||| ||||| |||| ||| ||||||||||||||||| ||||||||||| ||| |||||||| ||| ||||||||||||| ||| ||| |    
T  38576909 tgatttgattatggtacgaaagagatggaaatcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgattataaaa 38577008  T
Q  303 ataaagatgaagaaaagaaaatttttctttgat 335  Q
    ||||| ||||||||||  | |||||||||||||    
T  38577009 ataaatatgaagaaaatgagatttttctttgat 38577041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 192 - 377
Target Start/End: Complemental strand, 16863570 - 16863386
Alignment:
Q  192 aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaac 291  Q
    ||||| ||||| |||||||||||  |||||| |||| | ||||||||| |||||| ||| |||||||||| |||||||||||||||| ||||||||||||    
T  16863570 aatgacaagtaggattcgattctataacgaaggagatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaac 16863471  T
Q  292 taattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaattacgccaattcatctagaggtaatgtagaaaa 377  Q
    | |||||||||||||||| ||||||||   ||||||||||||||| ||  ||||||| |||||||||   | ||||||||||||||    
T  16863470 tgattgtaagaataaaga-gaagaaaaaggaatttttctttgatatggataaattaccccaattcatggtggggtaatgtagaaaa 16863386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 152 - 377
Target Start/End: Complemental strand, 35370552 - 35370327
Alignment:
Q  152 gcctacattaccacttgatgaattg-ggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 250  Q
    ||||||||||||  ||||||||||| || |||||| || ||||||| ||||||| |||||| ||||||  ||||||| ||  || |||||||||||||||    
T  35370552 gcctacattacccgttgatgaattgagggtaatttgctcctaatgacaagtatgtttcgat-ctggaataaatgagatgggtattacatgttgaatgaag 35370454  T
Q  251 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaaga--ataaagatgaagaaaagaaaatttttctttgataggggcaaattac 348  Q
    |||| ||||||||||| | |||||||||  |||||||||||| |||||||||   ||||||||||||||||   ||||||||||||||| ||  ||||||    
T  35370453 gagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaagatcgtaaagatgaagaaaag---atttttctttgatagtggtcaattac 35370357  T
Q  349 -gccaattcatctagaggtaatgtagaaaa 377  Q
      | |||||||| || ||||||||||||||    
T  35370356 tactaattcatcaaggggtaatgtagaaaa 35370327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 2248934 - 2249052
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaattttt 328  Q
    ||||| |||||||| ||| ||| |||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |  ||||||    
T  2248934 ggagaccacatgttcaattaagaagatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaatatgattttt 2249033  T
Q  329 ctttgataggggcaaatta 347  Q
    ||||||||| || ||||||    
T  2249034 ctttgatagaggtaaatta 2249052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 191 - 303
Target Start/End: Original strand, 9050085 - 9050197
Alignment:
Q  191 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 290  Q
    |||||| ||| ||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||| | | |||||||||||    
T  9050085 taatgacaagcatgattcgattttgtaacgaatgagatggagatcatatgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaa 9050184  T
Q  291 ctaattgtaagaa 303  Q
    || || |||||||    
T  9050185 ctgatcgtaagaa 9050197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 17606579 - 17606665
Alignment:
Q  182 atttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgat 268  Q
    ||||||| | ||||| ||||| |||| |||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  17606579 atttactcccaatgacaagtaggatttgattcttgaacgaatgagatggatatcacatgttgaatgaaggagatgaacaagtttgat 17606665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 101 - 315
Target Start/End: Complemental strand, 34176912 - 34176695
Alignment:
Q  101 tcttgagatgaaaatggtaattgattataagga--aaaaattctatccgtggtgcctacattaccacttgatgaattgggt-taatttacttctaatgat 197  Q
    |||||||||||||||||||| | ||| ||||||  |||||| |||||  || |||||| |||  |   ||||||||||||  ||||| | | |||||||     
T  34176912 tcttgagatgaaaatggtaactaattgtaaggagaaaaaatcctatcaatgatgcctagattttccaatgatgaattggggataattcaatcctaatgaa 34176813  T
Q  198 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattg 297  Q
    || |||||||||||| || |||||| |||| | |||||| ||||| |||||||||||||||||| |||||||||| | ||  || ||| |||||| ||||    
T  34176812 aaatatgattcgattatgaaacgaaagagatgaagatcatatgttaaatgaaggagatgaagaattttgatgttcctaaggtgataatagtaactgattg 34176713  T
Q  298 taagaataaagatgaaga 315  Q
    ||||| ||| || |||||    
T  34176712 taagagtaatgaagaaga 34176695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 28282776 - 28282667
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    ||||||||  ||||| | |||||  ||| |||| |||||||||||||| ||||||||||| |||||||||| |||| ||||||||||||||| | ||||     
T  28282776 taatttacccctaataacaagtaaaatttgattatggaacgaatgagatggagatcacatattgaatgaagcagataaagaagtttgatgttatggagat 28282677  T
Q  280 gaaaatggta 289  Q
    ||||||||||    
T  28282676 gaaaatggta 28282667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 34176705 - 34176610
Alignment:
Q  244 aatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggg 339  Q
    ||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||||  ||||||||||||||||| | |||| |||| | ||||||    
T  34176705 aatgaagaagatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaatataattgttctctaataggg 34176610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 38333818 - 38333913
Alignment:
Q  205 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    |||||||||| |||||||  ||| | |||| ||| |||||| ||| ||||| |||||||| ||||||||||||| |||||| ||||||||||||||    
T  38333818 attcgattctagaacgaaaaagatgaagatgacacgttgaacgaaagagattaagaagttagatgttcttgagatgaaaatagtaactaattgtaa 38333913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 34176948 - 34176882
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaag 301  Q
    |||||||||||||||||| ||||| | |||||||  |||||||||| ||||||||||||||||||||||    
T  34176948 atcacatgttgaatgaagaagatgtacaagtttg--gttcttgagatgaaaatggtaactaattgtaag 34176882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 292
Target Start/End: Original strand, 9050119 - 9050356
Alignment:
Q  55 agatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaaattctatccgtggtgcc 154  Q
    |||||||||||| ||| ||||||| ||| ||||||| |||||||| |||| | ||||||||||||| ||||  ||| ||||||||| |||    |   ||    
T  9050119 agatggagatcatatgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaactgatcgtaa-gaaaaaattatattgacgagacc 9050217  T
Q  155 tacattaccacttgatgaattg-ggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 253  Q
     |||||| | |||||||||||| || |||||||| ||||||||  |||| ||||||||| || ||| ||  ||| | | |||| ||||| |||||| |||    
T  9050218 aacattatctcttgatgaattgagggtaatttacctctaatgactagtaggattcgattatgaaacaaagaagatgtaaatcaaatgttaaatgaaagag 9050317  T
Q  254 atgaagaagtttgatgttcttgagaggaaaatggtaact 292  Q
    ||||| | | ||||| || || ||| |||||||| ||||    
T  9050318 atgaaaatgcttgatatttttaagatgaaaatggcaact 9050356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 2909897 - 2909857
Alignment:
Q  231 agatcacatgttgaatgaaggagatgaagaagtttgatgtt 271  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  2909897 agattacatgttgaatgaaggagatgaagaagtttgatgtt 2909857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 13712743 - 13712822
Alignment:
Q  224 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||| |||||| | ||||||||| ||| |||| |||||||||||||||||| ||| | ||||||||||| || |||||||    
T  13712743 gagatggagattagatgttgaataaagaagataaagaagtttgatgttcttaagatggaaatggtaactgatagtaagaa 13712822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 38576726 - 38576840
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    |||||||| || ||||| ||||||||||||||| ||||| ||| || | ||||| ||||||||||         |||||||||||||||  | ||||||     
T  38576726 taatttacctcaaatgacaagtatgattcgattttggaatgaaggatatggagaacacatgttga---------atgaagaagtttgattatattgagat 38576816  T
Q  280 gaaaatggtaactaattgtaagaa 303  Q
    ||||||||||||| ||||||||||    
T  38576817 gaaaatggtaactgattgtaagaa 38576840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 312
Target Start/End: Complemental strand, 25606474 - 25606360
Alignment:
Q  198 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattg 297  Q
    ||||| |||||| || ||||||||| |||| | | |||| ||||||||||||  |||||||||| ||||||||||| |||  ||||||| ||  | | ||    
T  25606474 aagtaggattcgtttatggaacgaaggagatgtatatcatatgttgaatgaaacagatgaagaattttgatgttctggagttgaaaatgatatttgagtg 25606375  T
Q  298 taagaataaagatga 312  Q
    |||||| ||||||||    
T  25606374 taagaaaaaagatga 25606360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 35373781 - 35373728
Alignment:
Q  232 gatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaat 285  Q
    ||||||||||||||||||||  | |||||||||||| |||||||||| ||||||    
T  35373781 gatcacatgttgaatgaaggtaaagaagaagtttgacgttcttgagatgaaaat 35373728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 339
Target Start/End: Original strand, 13712902 - 13713029
Alignment:
Q  214 tggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaa 313  Q
    |||||| || |||| | |||||||||||| |||||||||||| || ||||||||  || || |||  |||||||||||  |||||| ||||||| || ||    
T  13712902 tggaaccaaagagatgtagatcacatgttaaatgaaggagataaaaaagtttgaaatttttaagataaaaatggtaaccgattgtaggaataaatataaa 13713001  T
Q  314 gaaaagaaa--atttttctttgataggg 339  Q
     |||| | |  |||||||||||||||||    
T  13713002 aaaaatatatgatttttctttgataggg 13713029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 35371193 - 35371117
Alignment:
Q  224 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    |||| ||| |||||||||| ||||||||  |  |||||||||||||||||||| | ||||||||||| | |||||||    
T  35371193 gagatggaaatcacatgttaaatgaaggtaacaaagaagtttgatgttcttgatatgaaaatggtaaatgattgtaa 35371117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 13784507 - 13784444
Alignment:
Q  198 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaa 261  Q
    ||||| ||||||||||| |||||||||| |   | |||| ||||||||||||||||||||||||    
T  13784507 aagtaggattcgattcttgaacgaatgaaatatatatcatatgttgaatgaaggagatgaagaa 13784444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 40374123 - 40374184
Alignment:
Q  254 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    ||||||||||||||||||   || | |||| |||||||||||| ||| |||||||||||||||||    
T  40374123 atgaagaagtttgatgtt---gatatgaaagtggtaactaattttaataataaagatgaagaaaa 40374184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 165 - 303
Target Start/End: Original strand, 2243250 - 2243388
Alignment:
Q  165 cttgatgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 264  Q
    |||||||||||||| |||||||| |||||||| |||||  |||||||||| |||||||  ||| |||||||||||||||||||||||| |||||||||||    
T  2243250 cttgatgaattggggtaatttacctctaatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaaggatatgaagaagtt 2243349  T
Q  265 tgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2243350 tgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 40483795 - 40483655
Alignment:
Q  192 aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaac 291  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||  ||||||||||||||||||||| || ||| |||||| ||||     
T  40483795 aatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatgagtgagatgaagaagtttgatgtt-tttagatgaaaatagtaaa 40483697  T
Q  292 taattgtaagaataaagatgaagaaaagaaaatttttctttg 333  Q
    || || |||||||||||||||| ||||  || ||||||||||    
T  40483696 tatttttaagaataaagatgaaaaaaatgaattttttctttg 40483655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 973236 - 973114
Alignment:
Q  181 aatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagagg 280  Q
    ||||||||| ||||||||| |||||||| ||| || || |||||||| | |||||||||||||||| |||||||||||||| ||| ||||| ||||||      
T  973236 aatttacttttaatgataaatatgattcaattttgtaatgaatgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagata 973137  T
Q  281 aaaatggtaactaattgtaagaa 303  Q
    |||||| ||||||||||||||||    
T  973136 aaaatgataactaattgtaagaa 973114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 39808191 - 39808337
Alignment:
Q  190 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 289  Q
    ||||||| |||| |||||||||||| ||| ||| ||||   |||||| ||||| ||||||||||||||| |||||||||| |||| ||  ||||||| ||    
T  39808191 ctaatgacaagtgtgattcgattctagaatgaaagagacatagatcatatgttaaatgaaggagatgaaaaagtttgatggtcttaaggtgaaaatgata 39808290  T
Q  290 actaattgtaagaataaagatgaagaaaagaaaatttttctttgata 336  Q
    |||  || |||||||||| ||||| |||||| |||||||||||||||    
T  39808291 acttgttttaagaataaatatgaataaaagagaatttttctttgata 39808337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 17736852 - 17737001
Alignment:
Q  184 ttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaa 283  Q
    |||| |||||||| ||||||||||| ||| | |||||||||||||||| | || |||||||| |||| || | ||||| |||||| ||||| |||  |||    
T  17736852 ttacctctaatgacaagtatgattctattgtagaacgaatgagaaggaaaccatatgttgaaggaagaaggtaaagaaatttgatattcttaagataaaa 17736951  T
Q  284 atggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttga 334  Q
    |||||||   |||||||| ||||||||||| |||| || ||||||||||||    
T  17736952 atggtaatcgattgtaag-ataaagatgaaaaaaataagatttttctttga 17737001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 303
Target Start/End: Original strand, 17736713 - 17736826
Alignment:
Q  190 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 289  Q
    ||||||| ||||| ||||||||||| |||||||  |||  ||||||||||||||| ||||| |||||||||||||| || || |||||| ||||||||||    
T  17736713 ctaatgacaagtacgattcgattctagaacgaagaagatagagatcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggta 17736812  T
Q  290 actaattgtaagaa 303  Q
    | |  |||||||||    
T  17736813 attggttgtaagaa 17736826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 22780303 - 22780448
Alignment:
Q  190 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 289  Q
    ||||||| || ||||||| ||||||  |||||| | || | |||||||||||||||||||||| ||||||||||||  |||| |||||| |||||||||     
T  22780303 ctaatgacaactatgatttgattctaaaacgaaagggatgaagatcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatggtg 22780402  T
Q  290 actaattgtaagaataaagatgaagaaaagaaaatttttctttgat 335  Q
    ||| |||| || | ||||||| |||||||  |  ||||||||||||    
T  22780403 actcattgaaatagtaaagattaagaaaatgagttttttctttgat 22780448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 7215417 - 7215529
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    |||||||| |||||| | || |||||| || |||||||||||| |||| | |||||||||||||||||||| | ||||| |||||| |||||||||| |     
T  7215417 taatttacatctaataacaactatgatgcggttctggaacgaaagagatgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatat 7215516  T
Q  280 gaaaatggtaact 292  Q
    |||||| ||||||    
T  7215517 gaaaatagtaact 7215529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 972883 - 972801
Alignment:
Q  252 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttga 334  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| ||| ||||  || |||||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaattttttctttga 972801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 2243310 - 2243375
Alignment:
Q  55 agatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaa 120  Q
    |||||||||||||||| ||||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  2243310 agatggagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaa 2243375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 41264503 - 41264366
Alignment:
Q  177 ggttaatttacttctaatgataagtatgattcgattctgg-aacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttg 275  Q
    ||||||||||| |||||| | || |||||||||||| ||  |||||| |||| | |||||||||||||||||||  | ||||| |||||| |||||||||    
T  41264503 ggttaatttacctctaataacaattatgattcgattatgataacgaaagagatgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttg 41264404  T
Q  276 agaggaaaatggtaactaattgtaagaataaagatgaa 313  Q
    ||| |||||||  |||| ||| | | ||||||||||||    
T  41264403 agatgaaaatgacaactcattatcataataaagatgaa 41264366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 17739982 - 17739907
Alignment:
Q  190 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagttt 265  Q
    ||||| ||||||| ||||||||||||||||||| |||| | | |||||||||| ||||||| ||||||||||||||    
T  17739982 ctaataataagtaggattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaagatgaagaagttt 17739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 303
Target Start/End: Original strand, 7215224 - 7215368
Alignment:
Q  159 ttaccacttgatgaatt-gggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 257  Q
    ||||| |||| |||||| ||| ||||||||   ||||||||| |||||||| ||| | ||| |||  ||| ||||||||||| || ||||||| |||  |    
T  7215224 ttacctcttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaatgaaaaagatggagatcacatattcaatgaagaagaa-a 7215322  T
Q  258 agaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    ||||||||||||||||||||| ||||||||||  | ||||||||||    
T  7215323 agaagtttgatgttcttgagatgaaaatggtagttgattgtaagaa 7215368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 41264653 - 41264536
Alignment:
Q  182 atttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagagga 281  Q
    |||||| ||||||||||| |||||||||||| | |||| ||  | | ||| ||| || ||| |||||| ||||||||||| |||||||||||||| | ||    
T  41264653 atttacctctaatgataaatatgattcgattttagaacaaaaaatatggaaatctcaagttaaatgaaagagatgaagaaatttgatgttcttgatatga 41264554  T
Q  282 aaatggtaactaattgta 299  Q
    |||| |||||| ||||||    
T  41264553 aaattgtaactgattgta 41264536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 2822597 - 2822681
Alignment:
Q  205 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 289  Q
    ||||||||||| || |||||||| |||||||||| ||| || ||||||||||||||| ||| ||||| |||| | ||||||||||    
T  2822597 attcgattctgaaatgaatgagatggagatcacacgttaaaggaaggagatgaagaaatttaatgtttttgaaatgaaaatggta 2822681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 14138620 - 14138544
Alignment:
Q  231 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaa 307  Q
    |||| |||||||||||||| |||||||  ||||||||| ||||| ||| ||||||||||| | ||||||||||||||    
T  14138620 agattacatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaattgattgtaagaataaa 14138544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 40483940 - 40483880
Alignment:
Q  216 gaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttga 276  Q
    |||||||||||| |||||||||||||||| | ||| ||||||||||||| |||||||||||    
T  40483940 gaacgaatgagatggagatcacatgttgagtaaagaagatgaagaagttggatgttcttga 40483880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 37077707 - 37077641
Alignment:
Q  251 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    ||||||||||||||| |||||||||||| ||||||| ||||| ||| |||||||||||||| ||||||    
T  37077707 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaa 37077641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 22780174 - 22780244
Alignment:
Q  230 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    ||||||||||||||||||| | ||||||| |||||||||||| |||| |  |||||||||||| |||||||    
T  22780174 gagatcacatgttgaatgacgtagatgaaaaagtttgatgttattgaaataaaaatggtaactgattgtaa 22780244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 972959 - 972874
Alignment:
Q  231 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaa 316  Q
    |||| ||||||| |||||| ||||||||||| |||||| |||||| || |||||||| |||| |||  || |||||||||||||||    
T  972959 agataacatgttaaatgaaagagatgaagaaatttgattttcttgtgatgaaaatggcaactgatttcaaaaataaagatgaagaa 972874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 303
Target Start/End: Original strand, 7982214 - 7982327
Alignment:
Q  191 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaag-aagtttgatgttcttgagaggaaaatggta 289  Q
    ||||||||| ||| |||| |||||| || ||| ||||  || ||||||||||||||||||||||||||| || ||  ||||| ||||||  |||||| ||    
T  7982214 taatgataaatattattcaattctgaaatgaaggagatagaaatcacatgttgaatgaaggagatgaagaaacttaaatgtttttgagataaaaatgata 7982313  T
Q  290 actaattgtaagaa 303  Q
    ||||||||| ||||    
T  7982314 actaattgtgagaa 7982327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 37077836 - 37077763
Alignment:
Q  230 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    ||||||||||||||||||||  | || ||||| ||||||||| |||||| ||||||| ||||| ||||||||||    
T  37077836 gagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 37077763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 7113541 - 7113669
Alignment:
Q  159 ttaccacttgatgaattgggt-taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 257  Q
    ||||| |||| |||||| ||| ||||||||| |||||||||| || ||||  ||| ||||||||   | | | | |||||| |||||||||| |||||||    
T  7113541 ttacctcttgttgaattaggtgtaatttactcctaatgataaataagatttaattttggaacgatgtaaatgaaaatcacacgttgaatgaatgagatga 7113640  T
Q  258 agaagtttgatgttcttgagaggaaaatg 286  Q
    |||||||| || ||||||||| |||||||    
T  7113641 agaagtttaatattcttgagatgaaaatg 7113669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 39730312 - 39730363
Alignment:
Q  237 catgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggt 288  Q
    |||||| |||||| |||||||| ||||||||||||||||||| |||||||||    
T  39730312 catgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaatggt 39730363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 22780339 - 22780401
Alignment:
Q  56 gatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggt 118  Q
    |||| |||||||||| ||||||| ||||||||||| |||| ||| | ||||||||||||||||    
T  22780339 gatgaagatcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatggt 22780401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 26105493 - 26105538
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttctt 274  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||    
T  26105493 ggagatcacatgtgaaatgaaggagatggagaagtttgatgttctt 26105538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 5205509 - 5205585
Alignment:
Q  202 atgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgaga 278  Q
    ||||||||||| |  ||||||  ||| |||||||||||||| ||| |||||||| || |||||||||||| ||||||    
T  5205509 atgattcgattataaaacgaaatagatggagatcacatgtttaataaaggagataaaaaagtttgatgtttttgaga 5205585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 348
Target Start/End: Original strand, 7982382 - 7982497
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttcttt 332  Q
    |||||||||| || ||| |||  |||||| |||||||||||  ||| ||||||||||||| ||| ||| ||||||||| || ||    ||| ||||||||    
T  7982382 atcacatgttaaaagaaagagtcgaagaaatttgatgttctcaagatgaaaatggtaactgattttaacaataaagattaaaaaggtgaaaattttcttt 7982481  T
Q  333 gataggggcaaattac 348  Q
    || ||||| |||||||    
T  7982482 gaaaggggtaaattac 7982497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 17736796 - 17736838
Alignment:
Q  103 ttgagatgaaaatggtaattgattataaggaaaaaattctatc 145  Q
    ||||||||||||||||||||| || |||| |||||||||||||    
T  17736796 ttgagatgaaaatggtaattggttgtaagaaaaaaattctatc 17736838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 339
Target Start/End: Original strand, 27651380 - 27651616
Alignment:
Q  101 tcttgagatgaaaatggtaattgattataaggaaaaaattctatccgtggtgcctacattaccacttgatgaattgggttaa-tttacttctaatgataa 199  Q
    |||||||||||||||| ||||||||| |||| ||||||  ||||| |||  | ||||||||||  |||||||||||||   | |||||  || |||| ||    
T  27651380 tcttgagatgaaaatgataattgattgtaag-aaaaaaccctatcggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaaa 27651478  T
Q  200 gtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgta 299  Q
    ||||||||| ||||| || || | |||| ||| |||||||||||||||||||||||| ||  ||||||||||||||||| ||||||||| ||| ||||||    
T  27651479 gtatgattcaattctagaccggaggagatggatatcacatgttgaatgaaggagatg-agttgtttgatgttcttgagatgaaaatggttact-attgta 27651576  T
Q  300 agaataaagatgaagaaaagaaaatttttctttgataggg 339  Q
    | |||||||||||||||||   ||||||||||||||||||    
T  27651577 aaaataaagatgaagaaaaatgaatttttctttgataggg 27651616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 193 - 303
Target Start/End: Complemental strand, 23944189 - 23944079
Alignment:
Q  193 atgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaact 292  Q
    ||||||||||||||||||||||||||  || |||| ||| ||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||| ||||    
T  23944189 atgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatggcaact 23944090  T
Q  293 aattgtaagaa 303  Q
    |||||||||||    
T  23944089 aattgtaagaa 23944079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 34891610 - 34891536
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||||||| |||||||    
T  34891610 ggagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaa 34891536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 32138854 - 32138958
Alignment:
Q  199 agtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgt 298  Q
    ||||||||||| |||| |||||||  ||| |||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||| | ||| |    
T  32138854 agtatgattcgcttctagaacgaagaagatggagattacatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgatttt 32138953  T
Q  299 aagaa 303  Q
    |||||    
T  32138954 aagaa 32138958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 377
Target Start/End: Complemental strand, 43208823 - 43208674
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaattttt 328  Q
    |||||| ||| |||||| |||||| |||||| | |||||| ||||| | |  |||||||||| | |||||||||||||||||||||||||  || |||||    
T  43208823 ggagattacacgttgaacgaaggaaatgaaggaatttgatattcttaaaataaaaatggtaattgattgtaagaataaagatgaagaaaaataacttttt 43208724  T
Q  329 ctttgataggggcaaattacgc-caattcatctagaggtaatgtagaaaa 377  Q
     || |||||||  ||||||| | ||||||||| || | ||||||||||||    
T  43208723 attcgatagggataaattaccctcaattcatcaagggataatgtagaaaa 43208674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 42012926 - 42012804
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    |||||||||||||||||||| || ||||  ||||| |||||||  | | |||||||||||||||||| ||  ||||||| |||||||||||||||| ||     
T  42012926 taatttacttctaatgataaataagatttaattcttgaacgaagtaaatggagatcacatgttgaat-aaatagatgaaaaagtttgatgttcttgtgat 42012828  T
Q  280 gaaaatggtaactaattgtaagaa 303  Q
     ||| |||||||| ||| ||||||    
T  42012827 aaaagtggtaactgattctaagaa 42012804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 4674966 - 4674876
Alignment:
Q  248 aaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgatagg 338  Q
    |||||||| || ||||||||| ||||||||| |||||||||||||||||  || ||||||||| ||||||||  | ||||| |||||||||    
T  4674966 aaggagataaataagtttgattttcttgagatgaaaatggtaactaatttcaaaaataaagataaagaaaagggagtttttgtttgatagg 4674876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 33192336 - 33192414
Alignment:
Q  232 gatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagat 310  Q
    |||||| ||||||||||| ||||| ||||| ||| || ||||||||| |||||||||||||| |||||| |||||||||    
T  33192336 gatcacttgttgaatgaaagagataaagaaatttaatattcttgagaagaaaatggtaactacttgtaaaaataaagat 33192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 348
Target Start/End: Original strand, 757864 - 758062
Alignment:
Q  153 cctacattaccacttgatgaatt-gggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 251  Q
    ||||| ||| || |||||||||| ||| |||||||| | |||| ||||||| ||||| ||| | ||| ||| |||| | |||||||||||||||||||||    
T  757864 cctactttatcatttgatgaatttgggataatttacat-taataataagtaggattcaattatagaatgaaggagatgaagatcacatgttgaatgaagg 757962  T
Q  252 agatgaagaagtttgatgttcttgagaggaaaatggtaactaa-ttgtaagaataaagatgaagaaaaga--aaatttttctttgataggggcaaattac 348  Q
    |||| || || ||| |  || |||||| ||||||| ||||||| ||  || |||||||| ||| |||| |  | |||||||||||||||||| |||||||    
T  757963 agataaataaatttaagatttttgagatgaaaatgataactaatttaaaaaaataaagaagaaaaaaaaatgagatttttctttgataggggtaaattac 758062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 31152823 - 31152919
Alignment:
Q  154 ctacattaccacttgatgaattgggt-taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 249  Q
    |||||||| ||||||||||||||||  |||||||| | |||| | ||||| ||||||||| || |||||| |||| ||||||||||| |||||||||    
T  31152823 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 31152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 303
Target Start/End: Original strand, 31171384 - 31171535
Alignment:
Q  154 ctacattaccacttgatgaatt-gggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 252  Q
    |||||||| ||||||||||||| ||| |||||||| | |||| | ||||| ||||||||| || |||||| |||| ||| ||||||| |||||||||  |    
T  31171384 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggaaatcacattttgaatgaaaca 31171483  T
Q  253 gatgaagaagtttgatg-ttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||| ||||| |||| | ||||  ||| ||||||||||  |||||| |||||    
T  31171484 gatgtagaagattgaagtttctaaagatgaaaatggtatttaattgcaagaa 31171535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 32962311 - 32962434
Alignment:
Q  153 cctacattaccacttgatgaattgg-gttaatttact-tctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 250  Q
    ||||||||||| ||||||||||||| | ||||||| | | ||||||||| |||||||||||| || ||| ||  | | | |||||| ||||||||| |||    
T  32962311 cctacattaccccttgatgaattggaggtaatttattctataatgataaatatgattcgattttgaaacaaaaaatatgtagatcatatgttgaataaag 32962410  T
Q  251 gagatgaagaagtttgatgttctt 274  Q
    |||||||| ||||||||| |||||    
T  32962411 gagatgaaaaagtttgattttctt 32962434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 3191567 - 3191620
Alignment:
Q  231 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaa 284  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||| |||||    
T  3191567 agatcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaa 3191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 33362370 - 33362454
Alignment:
Q  189 tctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttct 273  Q
    ||||||| ||| |||||||||||| | |||| || |||  | | ||||||||||||||||||||||| || ||||||||||||||    
T  33362370 tctaatggtaaatatgattcgattttagaacaaaagagttgtaaatcacatgttgaatgaaggagattaaaaagtttgatgttct 33362454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 32138880 - 32138963
Alignment:
Q  55 agatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaaa 138  Q
    |||||||||| ||||| |||| || ||| |||||||  |||| || |||| ||||||||||||||||||||| |||| ||||||    
T  32138880 agatggagattacatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaaaa 32138963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 300
Target Start/End: Complemental strand, 34891506 - 34891371
Alignment:
Q  165 cttgatgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 264  Q
    ||||||||| |||| ||||||||  || |||| || ||  ||||||||  |||| ||| ||||   |||||||||||| ||||||| |||| ||||||||    
T  34891506 cttgatgaactggggtaatttacccctcatgacaaatacaattcgatttgggaatgaaagagatctagatcacatgttaaatgaagaagataaagaagtt 34891407  T
Q  265 tgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    |||||||||| | | ||||||| |||  ||||||||    
T  34891406 tgatgttcttaatatgaaaatgataatgaattgtaa 34891371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 8354394 - 8354444
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaa 283  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| ||||    
T  8354394 atcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaa 8354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 32988567 - 32988665
Alignment:
Q  280 gaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaatta-cgccaattcatctagaggtaatgtagaaaa 377  Q
    ||||||| || || ||||||||||||||||||||||||| |  |||||||||||||| | | |||||| | |||||||||| || | ||||||| ||||    
T  32988567 gaaaatgatagctgattgtaagaataaagatgaagaaaatatgatttttctttgatatgtgtaaattacccccaattcatcgagggataatgtataaaa 32988665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 29152350 - 29152399
Alignment:
Q  254 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||||||||||| |||||| |||||| |||||| ||||||||||    
T  29152350 atgaagaagtttgatgttattgagatgaaaatagtaactgattgtaagaa 29152399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 8900670 - 8900722
Alignment:
Q  251 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||||||||| |||||||||||  |||||||||| | ||||||||||    
T  8900670 gagatgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaa 8900722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 22593545 - 22593624
Alignment:
Q  204 gattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatg 286  Q
    ||||||||| | ||||||| ||||  || |||||||||||||||||  ||||   |||||||||||||||||||| |||||||    
T  22593545 gattcgattttagaacgaaggagatagatatcacatgttgaatgaaatagat---gaagtttgatgttcttgagatgaaaatg 22593624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 44755012 - 44754928
Alignment:
Q  205 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 289  Q
    |||||||| |||| | || |||| | |||||||||||||||||||  | | |||||||||||||||||| || | ||||||||||    
T  44755012 attcgattatggatcaaaggagatgaagatcacatgttgaatgaaataaaggaagaagtttgatgttctagaaatgaaaatggta 44754928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 333
Target Start/End: Original strand, 29152493 - 29152587
Alignment:
Q  236 acatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 333  Q
    ||||||||||||||| ||||||| || ||| ||||| ||||||  ||||| | | ||||||   |||||||||||||||||||| | |||||||||||    
T  29152493 acatgttgaatgaagtagatgaaaaa-tttaatgtttttgagataaaaatcgcagctaattc--agaataaagatgaagaaaaggagatttttctttg 29152587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 8900673 - 8900726
Alignment:
Q  84 atgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaa 137  Q
    ||||||| |||||||| ||||||||| |||||||||||| ||| |||| |||||    
T  8900673 atgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaa 8900726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 31152738 - 31152790
Alignment:
Q  238 atgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 290  Q
    |||||||||||| || ||||||||| |||||||| || ||| |||||||||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaa 31152790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 153 - 337
Target Start/End: Original strand, 38839582 - 38839765
Alignment:
Q  153 cctacattaccacttgatgaattgg-gttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 251  Q
    ||||||||||| ||||||||| ||  | ||||| ||| ||||||| ||||| ||||||||| |||||||||  |||   ||||||||||| ||||||||     
T  38839582 cctacattaccccttgatgaactgacggtaattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaaga 38839681  T
Q  252 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgatag 337  Q
    ||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||||  | |||||||||||||||    
T  38839682 agatgaagaggtttgatgttcttgagatgaaaat--taactaattgtaagaataaagatgaaaaaaattagatttttctttgatag 38839765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 49897996 - 49897873
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    |||||||| |||||||| || |||||||||||||| |||| || |||| |||||||||||||||||||||||||| ||||||||| || |||||||||      
T  49897996 taatttacctctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaatgaaggagaagaagaagttcgacgttcttgagct 49897897  T
Q  280 gaaaatggtaactaattgtaagaa 303  Q
     |||||||||| |||| |||||||    
T  49897896 aaaaatggtaattaatcgtaagaa 49897873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 377
Target Start/End: Complemental strand, 52432762 - 52432590
Alignment:
Q  205 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaat 304  Q
    |||||||| | |||| ||| ||| ||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||||||| | ||| |||||||    
T  52432762 attcgattatagaacaaattagatggagatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaat 52432663  T
Q  305 aaagatgaagaaaagaaaatttttctttgataggggcaaattacgcc-aattcatctagaggtaatgtagaaaa 377  Q
    ||||||||| || |  |  || || |||||||  || ||||||| || |||||||| |||||||||||||||||    
T  52432662 aaagatgaa-aatatgattttattatttgataatggtaaattaccccaaattcatcaagaggtaatgtagaaaa 52432590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 68208 - 68100
Alignment:
Q  195 gataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaa 294  Q
    ||||| ||| |||||||| |||||||||  ||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |  |||||||||||| |    
T  68208 gataaatatcattcgattttggaacgaaaaagatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactca 68109  T
Q  295 ttgtaagaa 303  Q
    |||||||||    
T  68108 ttgtaagaa 68100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 165 - 303
Target Start/End: Complemental strand, 3232270 - 3232131
Alignment:
Q  165 cttgatgaatt-gggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagt 263  Q
    ||||||||||| |||  ||||||| ||||||||||||||||||||||| || |||  || |||| |||||| ||||||||||||||| |||||||||||     
T  3232270 cttgatgaattaggggcaatttacctctaatgataagtatgattcgatactagaagtaaagagatggagattacatgttgaatgaagaagatgaagaag- 3232172  T
Q  264 ttgatgttcttga-gaggaaaatggtaactaattgtaagaa 303  Q
    | ||||||||||| |  ||||||||||||||||||||||||    
T  3232171 tggatgttcttgaggttgaaaatggtaactaattgtaagaa 3232131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 3367908 - 3367810
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgaga 278  Q
    |||||||||| ||||||||| ||||||   ||||||||||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  3367908 taatttacttttaatgataaatatgatataattctggaacgaaagagatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgaga 3367810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 7104387 - 7104295
Alignment:
Q  184 ttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttga 276  Q
    ||||||||||||| |||||||||||||||||| |||||| |||| | | || |||||||||||||||||||||||||| ||| || |||||||    
T  7104387 ttacttctaatgacaagtatgattcgattctgaaacgaaagagatgaatattacatgttgaatgaaggagatgaagaaatttaatattcttga 7104295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 337
Target Start/End: Original strand, 34601568 - 34601715
Alignment:
Q  189 tctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggt 288  Q
    |||||||| || |||||||||||| |  || ||| |||| | | |||||||||||||| ||| ||||||| | |||||||||| |||||| ||||||  |    
T  34601568 tctaatgacaactatgattcgattttataaggaaggagatgaatatcacatgttgaat-aagtagatgaaaacgtttgatgtttttgagatgaaaataat 34601666  T
Q  289 aactaattgtaagaataaagatgaagaaaagaaaatttttctttgatag 337  Q
    ||||||| ||||||||||||||||||||||  | |||||||||| ||||    
T  34601667 aactaatcgtaagaataaagatgaagaaaatgagatttttcttttatag 34601715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 46081048 - 46080974
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||    
T  46081048 ggagattacatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaa 46080974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 5500739 - 5500878
Alignment:
Q  153 cctacattaccacttgatgaattgg-gttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 251  Q
    ||||||||||| ||||||||||||  | |||||||  |||||| ||  |||| ||| ||||||| ||||||| ||| |||||||||||||||||| || |    
T  5500739 cctacattacctcttgatgaattgaagataatttatctctaataatctgtattatttgattctgaaacgaataagatggagatcacatgttgaat-aatg 5500837  T
Q  252 agatgaagaagtttgatgttcttgagaggaaaatggtaact 292  Q
    | |||||||| ||||||||| ||||||  ||||||||||||    
T  5500838 aaatgaagaaatttgatgtttttgagataaaaatggtaact 5500878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 303
Target Start/End: Complemental strand, 52432950 - 52432836
Alignment:
Q  189 tctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggt 288  Q
    |||||||| || ||||||| |||| || |||||| ||||   | || |||||| |||||||| | |||||||||||||||||| |||||| ||||||| |    
T  52432950 tctaatgacaaatatgatttgattatgaaacgaaagagataaaaattacatgtcgaatgaagaaaatgaagaagtttgatgtttttgagaagaaaatgat 52432851  T
Q  289 aactaattgtaagaa 303  Q
    |||||||||||||||    
T  52432850 aactaattgtaagaa 52432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 3232031 - 3231946
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||| |||||| | |||| |||||||  ||||| ||||||||||    
T  3232031 atcacatgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaatagcaactgattgtaaagataaacatgaagaaaa 3231946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 265
Target Start/End: Complemental strand, 68178 - 67967
Alignment:
Q  55 agatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaaattctatccgtggtgcc 154  Q
    |||||||||||||||| | ||||| ||| ||||||| ||| | || |||||| || |||||||||| | ||| |||| |||||   |||||  ||  |||    
T  68178 agatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaagaaaaaac--ctatcaatgaggcc 68081  T
Q  155 tacattacc-act--tgatgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 251  Q
    | ||||||| | |  ||||||| || | |||||||| |||||||| || |||||| ||||| ||||| ||| |||| | ||||||||||| |||||||||    
T  68080 tgcattacctaatgatgatgaaatgtggtaatttacctctaatgacaattatgatccgattttggaatgaaagagatgaagatcacatgtagaatgaagg 67981  T
Q  252 agatgaagaagttt 265  Q
    | ||||||||||||    
T  67980 atatgaagaagttt 67967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 15321156 - 15321029
Alignment:
Q  191 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 290  Q
    |||||| || ||||||| ||||||| || ||| |||| | |||| ||||||||||||||||| ||||| || ||| ||||| |||||| |||||||  ||    
T  15321156 taatgacaattatgatttgattctgaaatgaaagagatgaagattacatgttgaatgaaggatatgaaaaaatttaatgtttttgagaagaaaatgacaa 15321057  T
Q  291 ctaattgtaagaataaagatgaagaaaa 318  Q
    ||  |||||| ||| |||||||||||||    
T  15321056 ctcgttgtaataattaagatgaagaaaa 15321029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 44330589 - 44330466
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    |||||||||  |||| ||||||||||||| ||||| |||  |||||||  |||||||||||| |||| | ||| |||||||||| ||||||| |||| |     
T  44330589 taatttactcataataataagtatgattcaattcttgaataaatgagatagagatcacatgtagaataatggaaatgaagaagtgtgatgtttttgatat 44330490  T
Q  280 gaaaatggtaactaattgtaagaa 303  Q
    ||||||||||| |  |||||||||    
T  44330489 gaaaatggtaaatggttgtaagaa 44330466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 2534433 - 2534503
Alignment:
Q  248 aaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    |||||||||||||||||||||||| |||||| |||| |||||| | ||| ||| |||||||||||||||||    
T  2534433 aaggagatgaagaagtttgatgtttttgagatgaaagtggtaaattattttaaaaataaagatgaagaaaa 2534503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 45136757 - 45136833
Alignment:
Q  270 ttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaatt 346  Q
    |||||| || ||||||  ||||| |||||||||||||||||||||||||  | |||||||||||||||||| |||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaatgagatttttctttgataggggtaaatt 45136833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 46081054 - 46080962
Alignment:
Q  53 tcagatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaaattctatc 145  Q
    |||| ||||||| ||||| ||| ||| ||| ||||||| ||||  || |||||||||||||||||||||||||| |||| ||||||| |||||    
T  46081054 tcaggtggagattacatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaaaatcctatc 46080962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 52432742 - 52432666
Alignment:
Q  55 agatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgattataag 131  Q
    ||||||||||||| || | ||||| ||| ||||||| ||||  || |||||||||||||||||||||||||||||||    
T  52432742 agatggagatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataag 52432666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 10775289 - 10775166
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    |||||||||  ||||||||||||||| ||  |||| ||| |||  ||| | | || | |||||||| ||| |||||||||||||||||||||||| |||     
T  10775289 taatttactcttaatgataagtatgagtcagttctagaatgaagaagatgaaaattagatgttgaacgaaagagatgaagaagtttgatgttcttaagat 10775190  T
Q  280 gaaaatggtaactaattgtaagaa 303  Q
    ||||||||||| | ||| ||||||    
T  10775189 gaaaatggtaattgattctaagaa 10775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 24874715 - 24874601
Alignment:
Q  190 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg-aagaagtttgatgttcttgagaggaaaatggt 288  Q
    ||||||| |||||  |||||||||| ||| |||| |||  ||||||||||||||||| | ||||||| || ||||||||| ||||| | | |||||||||    
T  24874715 ctaatgacaagtagcattcgattctagaatgaataagacagagatcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggt 24874616  T
Q  289 aactaattgtaagaa 303  Q
    || | ||||||||||    
T  24874615 aattgattgtaagaa 24874601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 35957083 - 35956982
Alignment:
Q  206 ttcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaata 305  Q
    ||||||| | |||||||  ||| ||||||||||| || ||| || || ||| | |||||||||||| ||||||  |||||||||| ||||||||||||||    
T  35957083 ttcgatttttgaacgaaatagatggagatcacatattaaataaaagaaatggaaaagtttgatgtttttgagataaaaatggtaattaattgtaagaata 35956984  T
Q  306 aa 307  Q
    ||    
T  35956983 aa 35956982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 41148570 - 41148651
Alignment:
Q  165 cttgatgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaat 246  Q
    |||||||||||||| |||||||   ||||||| |||||  |||||||||| ||||||| |||| ||| ||||||||||||||    
T  41148570 cttgatgaattggggtaatttatccctaatgaaaagtagaattcgattctagaacgaaggagatggatatcacatgttgaat 41148651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 42819524 - 42819471
Alignment:
Q  281 aaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttga 334  Q
    |||||||||||||||| |||||||||| ||||||||||||  ||||||||||||    
T  42819524 aaaatggtaactaattttaagaataaatatgaagaaaagaggatttttctttga 42819471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 10775125 - 10775037
Alignment:
Q  198 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatg 286  Q
    ||||| ||||||||| |||||||||  | | | |||||||||||||||||||  ||| |||||| ||||||||||| |||| |||||||    
T  10775125 aagtaggattcgattatggaacgaagaaaatgaagatcacatgttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatg 10775037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 24873867 - 24873768
Alignment:
Q  205 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg-aagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||| ||| |||| |||  ||||||||||||||||| | ||||||| || ||||||||| ||||| | | ||||||||||| | ||||||||||    
T  24873867 attcgattctagaatgaataagacagagatcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggtaattgattgtaagaa 24873768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 34601366 - 34601484
Alignment:
Q  157 cattaccacttgatgaattgg-gttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagat 255  Q
    ||||||| ||| ||||||||| | |||||||| ||| |||| || ||||||| |||  | ||| ||   ||| ||| |||||||||||||| ||||||||    
T  34601366 cattaccccttaatgaattggtggtaatttacctcttatgacaattatgatttgatcatagaatgatgaagatggaaatcacatgttgaataaaggagat 34601465  T
Q  256 gaagaagtttgatgttctt 274  Q
    || ||||||||||||||||    
T  34601466 gaggaagtttgatgttctt 34601484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 42819702 - 42819624
Alignment:
Q  225 agaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||||| |||||||| |||   |||||| |||||| |||||||||||| ||||||| ||| | ||||||||||    
T  42819702 agaaggagatcatatgttgaaagaaaatgatgaataagttttatgttcttgagatgaaaatgataattgattgtaagaa 42819624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 12145093 - 12145005
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgat 268  Q
    |||||||| |||| ||||||||| |||| |||| | ||  ||  |||| | | ||||||||||||||||| ||||||||||||||||||    
T  12145093 taatttacctctattgataagtaggatttgattttagagtgacagagatgaaaatcacatgttgaatgaatgagatgaagaagtttgat 12145005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 46080910 - 46080821
Alignment:
Q  244 aatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttga 334  Q
    |||||| ||||||||||| |||||||||||| |||  ||||||||||   ||| | |||||||| ||||||||||  | ||||||||||||    
T  46080910 aatgaaagagatgaagaa-tttgatgttcttaagataaaaatggtaatcgattctgagaataaaaatgaagaaaatgagatttttctttga 46080821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 7749085 - 7749024
Alignment:
Q  224 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaat 285  Q
    |||| |||||||||||||| ||  ||| | |||||||| |||||||||||||||| ||||||    
T  7749085 gagatggagatcacatgttaaacaaagaaaatgaagaaatttgatgttcttgagatgaaaat 7749024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 10775215 - 10775162
Alignment:
Q  84 atgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaa 137  Q
    ||||||| ||||| || |||| ||||||||||||||||||||| |||| |||||    
T  10775215 atgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaa 10775162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 3232031 - 3231979
Alignment:
Q  63 atcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaat 115  Q
    |||||||| |||||||  || ||||||| |||||||| |||||||||||||||    
T  3232031 atcacatgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaat 3231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 3367794 - 3367746
Alignment:
Q  270 ttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    ||||||||| ||||| | ||||| || ||||||||||||||||||||||    
T  3367794 ttcttgagatgaaaacgataactgatcgtaagaataaagatgaagaaaa 3367746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 7104271 - 7104215
Alignment:
Q  205 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaa 261  Q
    ||||||||||| |||||| |||| | | || |||||||| |||||||||||||||||    
T  7104271 attcgattctgaaacgaaagagatgaatattacatgttgcatgaaggagatgaagaa 7104215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 231 - 334
Target Start/End: Complemental strand, 34695904 - 34695801
Alignment:
Q  231 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttct 330  Q
    ||||||||||||||||||||||| ||||||| ||||||  | |||| | ||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  34695904 agatcacatgttgaatgaaggaggtgaagaaatttgataattttgaaaagaaaatgataactgattgtaagaataaagatgaagaaaagagaatttttct 34695805  T
Q  331 ttga 334  Q
    ||||    
T  34695804 ttga 34695801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 153 - 303
Target Start/End: Complemental strand, 29969252 - 29969101
Alignment:
Q  153 cctacattaccacttgatgaattg-ggttaatttacttct-aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 250  Q
    ||||||||||| |||||||||||| || ||||||||  || ||||| |||||  |||||||| ||||||||| |||| | | ||||||||||||||||||    
T  29969252 cctacattaccccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacgaaagagatgaatatcacatgttgaatgaag 29969153  T
Q  251 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    | || ||||||||||||||||||||| |  |||||||||||| ||||||||||    
T  29969152 gggaagaagaagtttgatgttcttga-aaaaaaatggtaactgattgtaagaa 29969101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 35574610 - 35574712
Alignment:
Q  201 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    |||||||||||| |||||||||  ||| |||||| |||||||||||||| |||||||| || |||||||||||| ||| |||||| ||||||||||||||    
T  35574610 tatgattcgattttggaacgaaaaagatggagatgacatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaa 35574709  T
Q  301 gaa 303  Q
    |||    
T  35574710 gaa 35574712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 201 - 331
Target Start/End: Original strand, 37010315 - 37010445
Alignment:
Q  201 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    |||||||||||| ||||| ||| ||||  ||||||||||||| |||||| || ||||| |||||||||||| |||||| ||||||||||||||||| | |    
T  37010315 tatgattcgattatggaatgaaggagatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatggtaactaattttta 37010414  T
Q  301 gaataaagatgaagaaaagaaaatttttctt 331  Q
     |||||||||||| ||||  || ||||||||    
T  37010415 aaataaagatgaaaaaaatgaattttttctt 37010445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 358
Target Start/End: Original strand, 7590280 - 7590442
Alignment:
Q  196 ataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaat 295  Q
    ||||||| ||| |||||||| ||||||  ||| | ||| |||||  ||||||||| |||||||||| |||||||||||||| | |||| |||||||  ||    
T  7590280 ataagtaagatacgattctgaaacgaagaagatgaagaccacatagtgaatgaagaagatgaagaaatttgatgttcttgaaatgaaattggtaaccgat 7590379  T
Q  296 tgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaattacgccaattcat 358  Q
    |||||||||||||| ||||||||   | ||||||| | ||||||| |||||||  ||||||||    
T  7590380 tgtaagaataaagacgaagaaaaatgagtttttctataataggggtaaattacctcaattcat 7590442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 6630524 - 6630628
Alignment:
Q  216 gaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaaga 315  Q
    |||||||||||| ||||||||| |||| |||||||||||||||||| ||| ||| |||| ||| ||||||||||| | |||  ||||||||||| |||||    
T  6630524 gaacgaatgagatggagatcacttgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgatttgaagaataaagacgaaga 6630623  T
Q  316 aaaga 320  Q
    |||||    
T  6630624 aaaga 6630628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 334
Target Start/End: Original strand, 7405534 - 7405661
Alignment:
Q  207 tcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataa 306  Q
    |||||| ||||||||| |||| | ||||||||||||||||| |||||||||||| ||||||||| ||||| |  |||||   |||||||| |||||||||    
T  7405534 tcgattatggaacgaacgagatgaagatcacatgttgaatgtaggagatgaagacgtttgatgtgcttgacataaaaataacaactaattttaagaataa 7405633  T
Q  307 agatgaagaaaagaaaatttttctttga 334  Q
    |||| ||| |||   |||||||||||||    
T  7405634 agataaagtaaatggaatttttctttga 7405661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 32166592 - 32166707
Alignment:
Q  188 ttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatgg 287  Q
    ||||||||||||  | ||||| |||||  |||||| |||| | |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||     
T  32166592 ttctaatgataaaaaagattcaattctaaaacgaaagagatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatga 32166691  T
Q  288 taactaattgtaagaa 303  Q
    ||| | || |||||||    
T  32166692 taattgatagtaagaa 32166707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 12736136 - 12736059
Alignment:
Q  224 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaag 301  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||| || ||| | ||||||||||||||||||||    
T  12736136 gagatggacatcacatgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatggtaactaattgtaag 12736059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 29093644 - 29093581
Alignment:
Q  198 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaa 261  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  29093644 aagtatgatttgattatggaacgaaagagatggagatcacatgttgaatgaaggagatgaagaa 29093581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 39280984 - 39280912
Alignment:
Q  275 gagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaatta 347  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||   |||||||||||||||||| ||||||    
T  39280984 gagatgaaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaatta 39280912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 255
Target Start/End: Original strand, 32166629 - 32166825
Alignment:
Q  55 agatggagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaaattctatccgtggtgcc 154  Q
    ||||| |||| ||||| ||||| | ||| ||||||| ||||| || |||||||||||||||| ||||||||  |||| ||||    |||| ||  | ||     
T  32166629 agatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaa----ctat-cgatgagca 32166723  T
Q  155 tacattaccacttgatgaattgggt-taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 253  Q
    ||||||     |||||||||||||| |||||||| |||||||| ||||| ||||||||| ||||||||| |||| | | |||||||||| ||||||| ||    
T  32166724 tacatttttctttgatgaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaatgaagaag 32166823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 6630331 - 6630429
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgaga 278  Q
    ||||||||  ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||||||||||||  ||||||| |||||||||||||||||||    
T  6630331 taatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatgttgaatgaaaaagatgaaaaagtttgatgttcttgaga 6630429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 30547336 - 30547409
Alignment:
Q  245 atgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    |||||||||||||||||||||| |||| ||||||  ||||| |||| || ||| ||||||||| ||||||||||    
T  30547336 atgaaggagatgaagaagtttgttgtttttgagataaaaatagtaaatatttggaagaataaaaatgaagaaaa 30547409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 306
Target Start/End: Original strand, 35574743 - 35574884
Alignment:
Q  166 ttgatgaattg-ggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 264  Q
    ||||||||||| || ||||||||  ||||||| || |||||||||||| ||||||||| ||||   | |||| ||||| |||||| || ||||| ||  |    
T  35574743 ttgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaacgaaagagattaaaatcatatgttcaatgaaagatatgaaaaaaat 35574842  T
Q  265 tgatgttcttgagaggaaaatggtaactaattgtaagaataa 306  Q
    | |||||||||||| |||||| ||||||  |||||| |||||    
T  35574843 taatgttcttgagatgaaaatagtaactcgttgtaataataa 35574884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 377
Target Start/End: Complemental strand, 12782527 - 12782311
Alignment:
Q  156 acattaccacttgatgaattg-ggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 254  Q
    |||||||| ||  |||||||| || ||| |||| |||||||| |||||  ||||||||||| |||| | |||| ||| | ||||  ||||||||| || |    
T  12782527 acattacccctcaatgaattgaggataaattacctctaatgacaagtagaattcgattctgaaacgtaggagatggataacacacattgaatgaaagaaa 12782428  T
Q  255 tgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaattacgcca-a 353  Q
    || | ||||||| |     ||||  |||||| |||| | |||||||||||||||||||| ||||||  | ||||||||||||  || ||||||| ||| |    
T  12782427 tgtataagtttgtt-----tgagttgaaaatagtaattgattgtaagaataaagatgaa-aaaagaggacttttctttgata-tggtaaattactccaca 12782335  T
Q  354 ttcatctagaggtaatgtagaaaa 377  Q
    |||||| |||||||||||||||||    
T  12782334 ttcatcaagaggtaatgtagaaaa 12782311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 6803876 - 6803989
Alignment:
Q  166 ttgatgaattgggt-taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 264  Q
    |||||||||||||  ||||||||  ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||| ||||||||  |||| ||||||||    
T  6803876 ttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatggtgaatgaaaaagataaagaagtt 6803975  T
Q  265 tgatgttcttgaga 278  Q
    ||||||| ||||||    
T  6803976 tgatgtttttgaga 6803989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 337
Target Start/End: Complemental strand, 31475111 - 31475009
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttcttt 332  Q
    |||||||  ||||| ||| |||||||||||||||||||||||||||  ||||| |||||| |||  || ||| |||| |||||||| |  ||||||||||    
T  31475111 atcacattgtgaatcaagaagatgaagaagtttgatgttcttgagataaaaatagtaactgatt-caaaaat-aagaggaagaaaatatgatttttcttt 31475014  T
Q  333 gatag 337  Q
    |||||    
T  31475013 gatag 31475009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 33897807 - 33897753
Alignment:
Q  236 acatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 290  Q
    ||||||||||||||||| || ||||| ||||||||| |||||| |||||| ||||    
T  33897807 acatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaa 33897753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 156 - 290
Target Start/End: Complemental strand, 32047325 - 32047190
Alignment:
Q  156 acattaccacttgatgaattg-ggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 254  Q
    |||||| | |||||||||||| || |||||||| |||||||||||||| ||||| ||| ||||| |||  ||| | | |||| |||||||||||| ||||    
T  32047325 acattatcccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgaga 32047226  T
Q  255 tgaagaagtttgatgttcttgagaggaaaatggtaa 290  Q
    |||||||||||||||||||||||| |||||||||||    
T  32047225 tgaagaagtttgatgttcttgagatgaaaatggtaa 32047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 32342737 - 32342603
Alignment:
Q  169 atgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgat 268  Q
    |||||||||| |||||||    ||||||||| ||||||| ||||||||||||||  | |  |||||| ||||||||||||| |||||||| |||||||||    
T  32342737 atgaattggggtaatttatccttaatgataaatatgatttgattctggaacgaaaaaaatagagatcgcatgttgaatgaatgagatgaaaaagtttgat 32342638  T
Q  269 gttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    ||| |||||| ||||||| ||| | ||||||||||    
T  32342637 gtttttgagatgaaaatgataattgattgtaagaa 32342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 20068024 - 20067904
Alignment:
Q  198 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattg 297  Q
    ||||| ||||||||| |||||||||||||  | ||||||||||||||| ||||  || |||||||| | ||||| |||||| ||||||| ||||| |||     
T  20068024 aagtaggattcgattatggaacgaatgaggggaagatcacatgttgaaggaagatgaagaagaagtataatgttattgagatgaaaatgataactgattc 20067925  T
Q  298 taagaataaagatgaagaaaa 318  Q
    |||||||||| ||||||||||    
T  20067924 taagaataaaaatgaagaaaa 20067904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 32047144 - 32047039
Alignment:
Q  153 cctacattaccacttgatgaattgg-gttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 251  Q
    ||||||||||| ||||||||||||  | ||||||||||||| ||| || || ||||| |||||||||||||  | ||||||||||||||||||||||||     
T  32047144 cctacattacctcttgatgaattgatggtaatttacttctattgacaaataggattcaattctggaacgaagaaaaaggagatcacatgttgaatgaaga 32047045  T
Q  252 agatga 257  Q
    ||||||    
T  32047044 agatga 32047039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 23577224 - 23577165
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaact 292  Q
    |||| ||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||    
T  23577224 atcagatgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaact 23577165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 303
Target Start/End: Complemental strand, 20068239 - 20068089
Alignment:
Q  153 cctacattaccacttgatgaattgg-gttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 251  Q
    ||||||||||| || |||||||||| | || ||||| | |||||||||||| ||||  |||||| |  |||  |||   |||| |||||||||||||| |    
T  20068239 cctacattacctctcgatgaattggtgatattttacctttaatgataagtaagattttattctgaactgaagaagataaagatgacatgttgaatgaaag 20068140  T
Q  252 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||| |||||||||||||||  | | ||||||||| ||| ||||||||||    
T  20068139 agatgaggaagtttgatgttctctacatgaaaatggt-actgattgtaagaa 20068089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 20206481 - 20206541
Alignment:
Q  257 aagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaa 317  Q
    ||||||||||||||| |||||| ||||||| ||| | |||||||||||||| | |||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaa 20206541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 22100504 - 22100564
Alignment:
Q  257 aagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaa 317  Q
    ||||||||||||||| |||||| ||||||| ||| | |||||||||||||| | |||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaa 22100564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 7556116 - 7556171
Alignment:
Q  231 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatg 286  Q
    ||||||||||||||||||| || ||||| || ||| |||||||||||| |||||||    
T  7556116 agatcacatgttgaatgaatgatatgaataaatttaatgttcttgagatgaaaatg 7556171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 32047010 - 32046954
Alignment:
Q  281 aaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgatag 337  Q
    |||||| ||| | |||||||||||||||||  |||||| | ||||||||||||||||    
T  32047010 aaaatgataattgattgtaagaataaagatagagaaaatagaatttttctttgatag 32046954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 154 - 303
Target Start/End: Complemental strand, 22051005 - 22050855
Alignment:
Q  154 ctacattaccacttgatgaattgggt-taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 252  Q
    ||||| |||| ||| ||||||||||  ||||||||   ||||||||| ||||||||||||||| || |||||||| | ||||||||||||||||||||||    
T  22051005 ctacaatacccctttatgaattgggggtaatttacccttaatgataaatatgattcgattctgaaaggaatgagatgaagatcacatgttgaatgaagga 22050906  T
Q  253 gatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||  ||  |||| || |||  |||||| ||||||||||||||||    
T  22050905 gatgaagaaacttattgtttttaagataaaaatgataactaattgtaagaa 22050855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 273
Target Start/End: Complemental strand, 25062542 - 25062352
Alignment:
Q  84 atgaagatgtttgttgctcttgagatgaaaatggtaattgattataaggaaaaaattctatccgtggtgcctacattaccacttgatgaattg-ggttaa 182  Q
    ||||||| ||||| |  |||||||||||||| ||||||||||| |||| ||||||    ||  |||  ||||||||||   |||||||||||| || |||    
T  25062542 atgaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacattattccttgatgaattgagggtaa 25062443  T
Q  183 tttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttct 273  Q
    |||||  ||||| | ||||| |||| |||| |||||| || |||| | |||||||||||| ||||||| ||||||||||||||||||||||    
T  25062442 tttacccctaataacaagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcagatgaagaagtttgatgttct 25062352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 15131574 - 15131647
Alignment:
Q  230 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||  |||||||||||| || |||||||    
T  15131574 gagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaa 15131647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 327
Target Start/End: Original strand, 20512797 - 20512923
Alignment:
Q  201 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    |||||||||||| || |||||| || | |||||| ||||||| ||||||| ||||||||||||||||||||  | ||| |||||||  || | ||| |||    
T  20512797 tatgattcgattatgaaacgaaggatatggagattacatgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatgacaattgattttaa 20512896  T
Q  301 gaataaagatgaagaaaagaaaatttt 327  Q
     |||||||||||||||||  |||||||    
T  20512897 aaataaagatgaagaaaatgaaatttt 20512923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 25062616 - 25062493
Alignment:
Q  180 taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 279  Q
    ||||||||  || |||| ||||||||||| ||||||||  |||  ||||  |||| ||| |||||| |||| ||||||||||||||||| |||||||||     
T  25062616 taatttacaactcatgacaagtatgattcaattctggattgaagaagaaaaagattacaagttgaacgaagaagatgaagaagtttgatattcttgagat 25062517  T
Q  280 gaaaatggtaactaattgtaagaa 303  Q
    ||||| ||||| | ||||||||||    
T  25062516 gaaaacggtaattgattgtaagaa 25062493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 22050774 - 22050725
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgaga 278  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  22050774 ggagatcacatgttaaatgaaggaaatgaagaagtttgatgttgttgaga 22050725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 15131574 - 15131639
Alignment:
Q  60 gagatcacatgctgaatgacggatatgaagatgtttgttgctcttgagatgaaaatggtaattgat 125  Q
    ||||||||||||||||||| ||| |||||||  |||| || ||||||||| |||||||||| ||||    
T  15131574 gagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 20512668 - 20512740
Alignment:
Q  231 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||||| ||||||| | ||||||||  || ||||| |||||| ||||| | ||||||||||||||||    
T  20512668 agatcacatgttcaatgaagaatatgaagaaacttaatgtttttgagatgaaaaagataactaattgtaagaa 20512740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 4115389 - 4115452
Alignment:
Q  237 catgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 300  Q
    ||||||||||||| |||||| |||||||| |||||||| |||  |||||||||| |||| ||||    
T  4115389 catgttgaatgaatgagatggagaagtttcatgttcttaagataaaaatggtaattaatagtaa 4115452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 25234202 - 25234261
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaact 292  Q
    ||||||| ||||  |||||| || ||||| |||||||||||||||| |||||||||||||    
T  25234202 atcacatattgacggaaggatattaagaaatttgatgttcttgagatgaaaatggtaact 25234261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 54000045 - 54000119
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||||||||||||||||| || | ||||||    |||||||||||||||| ||||||||||| | || |||||||    
T  54000045 ggagatcacatgttgaataaatgtgatgaatttttttgatgttcttgagatgaaaatggtaattgatagtaagaa 54000119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 44591971 - 44592031
Alignment:
Q  254 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaag 314  Q
    |||||||||||| ||||| |||||| |||||| ||||||  |||||| ||||| |||||||    
T  44591971 atgaagaagtttaatgtttttgagatgaaaatagtaacttgttgtaataataatgatgaag 44592031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 39341340 - 39341202
Alignment:
Q  166 ttgatgaatt-gggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 264  Q
    |||||||||| ||| |||||||| ||||||||||| || ||||| ||| | |||||||  | | ||||||| |||||||||||||||||||||| |||||    
T  39341340 ttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttgaatgaaggagatgaaaaagtt 39341241  T
Q  265 tgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    |||| ||||| ||| ||||||||||||| || |||||||    
T  39341240 tgatattcttaagatgaaaatggtaactcatagtaagaa 39341202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 13283806 - 13283927
Alignment:
Q  197 taagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaatt 296  Q
    |||||| ||||||||||| |||| || | || |||||||||| |||||||||| ||| |||| |||||||||||||||| || |||||| | || | |||    
T  13283806 taagtaggattcgattctagaacaaaagtgatggagatcacacgttgaatgaatgagttgaataagtttgatgttcttgtgatgaaaatagcaattgatt 13283905  T
Q  297 gtaagaataaagatgaagaaaa 318  Q
    | ||||||||||||||||||||    
T  13283906 gaaagaataaagatgaagaaaa 13283927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 337
Target Start/End: Complemental strand, 7938220 - 7938035
Alignment:
Q  153 cctacattaccacttgatgaattgggt-taatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 251  Q
    ||||||||||| |||||||||||| || ||||||||   ||||||||| || ||||||||||| || | ||  | | ||||||| |||||||||||||||    
T  7938220 cctacattacc-cttgatgaattgcgtgtaatttacccttaatgataaataagattcgattctagagcaaagaaaacggagatcgcatgttgaatgaagg 7938122  T
Q  252 agatgaagaagtttgatgttcttgagaggaaaa--tggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgatag 337  Q
    |||| || || ||||||||| |||||| |||||  | | |||  || |||||||||||||||||||||| | ||||||||||||||||    
T  7938121 agataaaaaa-tttgatgtttttgagatgaaaaaatagcaacggatcgtaagaataaagatgaagaaaatataatttttctttgatag 7938035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 2563073 - 2562969
Alignment:
Q  153 cctacattaccacttgatgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 252  Q
    ||||||||||| ||||||||||  || ||||||||  | |||||||||||||||||||||||| ||| ||||| |  |||||||||||||||||||| ||    
T  2563073 cctacattaccccttgatgaatatgggtaatttacc-caaatgataagtatgattcgattctgaaacaaatgatatagagatcacatgttgaatgaaaga 2562975  T
Q  253 gatgaa 258  Q
    ||||||    
T  2562974 gatgaa 2562969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 339
Target Start/End: Complemental strand, 54437733 - 54437604
Alignment:
Q  210 attctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaaga 309  Q
    ||||||||||||| |||| | || | ||||||| ||||||||| |||||||||||| ||||| |||||| ||||||||||| |  |||||| ||||||||    
T  54437733 attctggaacgaaagagatgaagtttacatgttaaatgaaggatatgaagaagtttaatgttattgagatgaaaatggtaatttgttgtaataataaaga 54437634  T
Q  310 tgaagaaaagaaaatttttctttgataggg 339  Q
    ||| |||||  |  |||| |||||||||||    
T  54437633 tgaggaaaatgagtttttcctttgataggg 54437604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 152 - 303
Target Start/End: Complemental strand, 54437961 - 54437809
Alignment:
Q  152 gcctacattaccacttgatgaatt-gggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 250  Q
    |||||| ||||| |||| |||||| ||| |||||||| ||||||||||| ||||||| |||| |  || |||  ||| ||| | ||| |||| ||||| |    
T  54437961 gcctacgttaccccttgttgaattaggggtaatttacctctaatgataaatatgatttgattttaaaatgaaaaagatggaaaccacgtgttaaatgagg 54437862  T
Q  251 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
     |||||||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  54437861 aagatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaa 54437809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 7641900 - 7641806
Alignment:
Q  254 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaattac 348  Q
    ||||| ||||||||||||||||| |  |||||| ||||| ||| ||||||||||| |||||||||  ||| |||||||||||||||| |||||||    
T  7641900 atgaaaaagtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaattttctttgataggggtaaattac 7641806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 20519256 - 20519353
Alignment:
Q  191 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggt 288  Q
    |||||||||||  ||||  ||| |||||| || |||| |||||||||||||| |||||| ||||||||||| ||||| |||||||||| |||||||||    
T  20519256 taatgataagttggattaaattttggaacaaaggagatggagatcacatgtttaatgaaagagatgaagaaatttgacgttcttgagatgaaaatggt 20519353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 48646526 - 48646411
Alignment:
Q  191 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 290  Q
    |||||||||| | ||||||||| || |||||||||||  |||| || ||||||||||||| | ||||| ||||||||||||||| ||| ||||||||| |    
T  48646526 taatgataagcaggattcgattatgaaacgaatgagatagagaccatatgttgaatgaagaatatgaa-aagtttgatgttcttaagatgaaaatggtca 48646428  T
Q  291 ctaattgtaagaataaa 307  Q
     | ||| ||||||||||    
T  48646427 ttgattataagaataaa 48646411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 34762089 - 34762222
Alignment:
Q  198 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattg 297  Q
    ||||||| || ||||||  |||||| ||||  |||||||| ||||||||||| |||||||| || ||||||||| || | |  ||||| ||||| |||||    
T  34762089 aagtatggtttgattctccaacgaaagagatagagatcacgtgttgaatgaatgagatgaataaatttgatgtttttcata-taaaatagtaaccaattg 34762187  T
Q  298 taagaataaagatgaagaaaagaaaatttttcttt 332  Q
    ||||||||||||| || |||| | |||||||||||    
T  34762188 taagaataaagattaaaaaaatagaatttttcttt 34762222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 377
Target Start/End: Complemental strand, 46303447 - 46303299
Alignment:
Q  229 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaattttt 328  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||  |||  |||||| ||  | |||||||||| || |||||| ||||  | ||||||    
T  46303447 ggagatcacatgttgaataaagaagatgaagaagtttgatgctctatagataaaaatgatatttgattgtaagaa-aatgatgaaaaaaaatagattttt 46303349  T
Q  329 ctttgataggggcaaattac-gccaattcatctagaggtaatgtagaaaa 377  Q
    |||||||||| | |||||||  |||||||||| ||   ||||||||||||    
T  46303348 ctttgataggagtaaattactcccaattcatcaaggaataatgtagaaaa 46303299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 21570436 - 21570356
Alignment:
Q  238 atgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    |||||||| |||  ||||||| |||||||||||||||| || |||||| ||||  |||||||||||||||||| |||||||    
T  21570436 atgttgaacgaattagatgaaaaagtttgatgttcttgtgatgaaaatagtaatcaattgtaagaataaagataaagaaaa 21570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 42091793 - 42091861
Alignment:
Q  233 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaag 301  Q
    |||||||||| |||||| |||||||| |||||||||||| |||||| ||||||| ||| ||||||||||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaag 42091861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 51260553 - 51260654
Alignment:
Q  158 attaccacttgatgaattgggttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 257  Q
    |||||| |||||||||||||| | |||||| | | |||||||||| |||||||||||  || ||| || | ||| ||||||||||||||||| |||||||    
T  51260553 attacctcttgatgaattggggtgatttacct-tcatgataagtaggattcgattctaaaatgaaagatatggaaatcacatgttgaatgaatgagatga 51260651  T
Q  258 aga 260  Q
    |||    
T  51260652 aga 51260654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 6138566 - 6138487
Alignment:
Q  239 tgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    ||||||||||| ||| |||| ||| |||||||||||| || |||||| | || | |||| ||||||||||||||||||||    
T  6138566 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 6138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 318
Target Start/End: Original strand, 20519434 - 20519556
Alignment:
Q  201 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatg-----ttcttgagaggaaaatggtaactaat 295  Q
    |||||||| ||| |||||||||  ||| ||| |||||| ||||||||||| | ||||| ||||||||||     || || | |  |||||||||||| ||    
T  20519434 tatgattcaattttggaacgaaaaagatggatatcacacgttgaatgaagaaaatgaaaaagtttgatgtttttttttttatattaaaatggtaactgat 20519533  T
Q  296 tgtaagaataaagatgaagaaaa 318  Q
    |||||||| ||||||||||||||    
T  20519534 tgtaagaagaaagatgaagaaaa 20519556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 45228277 - 45228378
Alignment:
Q  181 aatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagagg 280  Q
    |||||||  ||| |||||||||| |||||||| |||||| ||||||  ||| ||||||| ||||||| ||   ||||| |||||| |||||||||||| |    
T  45228277 aatttacacctattgataagtataattcgattttggaacaaatgagttggatatcacatattgaatgcag---atgaaaaagtttaatgttcttgagatg 45228373  T
Q  281 aaaat 285  Q
    |||||    
T  45228374 aaaat 45228378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 34761943 - 34762025
Alignment:
Q  221 aatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 303  Q
    ||||||| | |||||||||||||| |||||||||| || | ||||||| |||| |||| ||||||| ||| | |||| |||||    
T  34761943 aatgagatgaagatcacatgttgagtgaaggagataaaaaggtttgatattctcgagatgaaaatgataattgattgaaagaa 34762025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 36907 - 37012
Alignment:
Q  166 ttgatgaattgg-gttaatttacttctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 264  Q
    |||||||||||| | ||||||||   |||| ||||||| ||||||||| || ||| ||||||| | |||||||||||||||| || ||||||||||| ||    
T  36907 ttgatgaattggaggtaatttacacataataataagtaggattcgattatgaaacaaatgagatgaagatcacatgttgaataaacgagatgaagaaatt 37006  T
Q  265 tgatgt 270  Q
    ||||||    
T  37007 tgatgt 37012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 853 - 772
Alignment:
Q  236 acatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 318  Q
    ||||||||||| ||||||||||||||||||||| | ||||| ||||||||| ||| | | ||||| |||||| ||||||||||    
T  853 acatgttgaatcaaggagatgaagaagtttgatatacttgaaaggaaaatgataaatga-tgtaaaaataaaaatgaagaaaa 772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 377
Target Start/End: Original strand, 5456 - 5582
Alignment:
Q  252 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgataggggcaaatta-cgc 350  Q
    ||||||||||||||||| || |||||| |||||| ||| || ||| |||| ||||||||||||||||    |||||| ||||||| ||| |||||| |      
T  5456 agatgaagaagtttgatctttttgagatgaaaattgtacctgattttaaggataaagatgaagaaaaagttatttttatttgatatgggtaaattacctt 5555  T
Q  351 caattcatctagaggtaatgtagaaaa 377  Q
    |||||| |  |||||||||||||||||    
T  5556 caattcgttaagaggtaatgtagaaaa 5582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 5298 - 5335
Alignment:
Q  230 gagatcacatgttgaatgaaggagatgaagaagtttga 267  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  5298 gagatcacatgttgaatgaaggagataaagatgtttga 5335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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