View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_42 (Length: 480)
Name: NF1126_low_42
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_42 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 29 - 480
Target Start/End: Original strand, 37304170 - 37304620
Alignment:
| Q |
29 |
actttggtcgtggagacaacaaaatctgcgttgattttaatctcatacnnnnnnngaacgccgaaaaatataggttttgatcccctacaatagcgttgct |
128 |
Q |
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| T |
37304170 |
actttggtcgtggagacaacaaaatctgcattgattttaatctcatactttttcc-aacgccgaaaaatataggtttcgatcccctacaatagtgttgtt |
37304268 |
T |
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| Q |
129 |
gcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaaccagattggtctcgatatatgtg |
228 |
Q |
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| T |
37304269 |
gcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaaccagattggtctcgatatatgtg |
37304368 |
T |
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| Q |
229 |
tctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatgttc |
328 |
Q |
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| T |
37304369 |
tctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatgttc |
37304468 |
T |
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| Q |
329 |
atcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgcgaagtttc |
428 |
Q |
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| T |
37304469 |
atcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgcgaagtttc |
37304568 |
T |
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| Q |
429 |
tcattttcagttctaagtgaagtattctcatgcctctcctgttgagtctgca |
480 |
Q |
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| T |
37304569 |
tcattttcagttctaagtgaagtattctcatgcctctcctgttgagtctgca |
37304620 |
T |
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Back To:
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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 16825536 - 16825423
Alignment:
| Q |
305 |
attttcaatcctcaagtgatgttcatcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaac |
404 |
Q |
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|||||||| |||||| |||||||||||||| |||||||| || ||||| ||||| ||||||||||||||||| |||||||| || |||||||||||| || |
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| T |
16825536 |
attttcaagcctcaaatgatgttcatcaaatgacatttcacctatagctgttggaccaccacaattaggacatgaagcattgctaagagcttctctatac |
16825437 |
T |
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| Q |
405 |
ctcatgttatcagc |
418 |
Q |
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| T |
16825436 |
ctcatgttatcagc |
16825423 |
T |
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