View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_44 (Length: 477)
Name: NF1126_low_44
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Complemental strand, 53294832 - 53294394
Alignment:
| Q |
30 |
taagcatgatatacctatcaagtcagagggattttttccgttgcaaaatcgaccagttggaatccctccctcaaaatcttgaccataaggagggaaattg |
129 |
Q |
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| T |
53294832 |
taagcatgatataccgatcaagtcagagggattttttccgttgcaaaatcgaccagttggaatccctccctcaaaatcttgaccataaggagggaaattg |
53294733 |
T |
|
| Q |
130 |
cacttgacgattgttttgatgttattgttatttcctgtatccattatagaatctccaaaagctatgagtgcaggaattgtaacatttggtggtagtttaa |
229 |
Q |
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| T |
53294732 |
cacttgacgattgttttgatgttattgttatttcctgtatccatgatagaatctccaaaagctatgagtgcaggaattgtaacatttggtggtagtttaa |
53294633 |
T |
|
| Q |
230 |
ccaatgcgttcgttctatacgataaaactaataacaacatgaaacgtaataatattaagctatttggtgaataagtgccaggcagcttcatcataattaa |
329 |
Q |
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| T |
53294632 |
ccaatgcgttcgttctatacgataaaactaacaacaacatgaaacgtaataatattaagctatttggtgaataagtgccaggcagcttcatcataattaa |
53294533 |
T |
|
| Q |
330 |
cacagccatatagatagctatctactgtgtatattttctcatcaagcaagggatagctttttcatctcttttggtacgtactttgcgtcaatttatagct |
429 |
Q |
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| T |
53294532 |
cacagccatatagatagctatctactgtgtatattttctcatcaagcaagggatagctttttcatctcttttggtacgtactttgcgtcaatttatagct |
53294433 |
T |
|
| Q |
430 |
agcacgtctttagtccattatttaatgcatgagaataat |
468 |
Q |
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| T |
53294432 |
agcacgtctttagtccattatttaatgcatgagaataat |
53294394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 8286114 - 8285955
Alignment:
| Q |
62 |
tttttccgttgcaaaatcgaccagttggaatccctccctcaaaatcttgaccataaggagggaaattgcacttgacgattgttttgatgttattgttatt |
161 |
Q |
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||||||| |||||||| ||||||||||| | || || | |||||||| |||||||||||||||||||| ||||| | ||||||| || || || || |
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| T |
8286114 |
tttttccattgcaaaaacgaccagttgggacaccaccttgaaaatctttgccataaggagggaaattgcatttgaccaaagttttgaggtcgttattgtt |
8286015 |
T |
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| Q |
162 |
tcctgtatccattatagaatctccaaaagctatgagtgcaggaattgtaacatttggtgg |
221 |
Q |
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| T |
8286014 |
tcctgaatcaactattgaatctccaaatgctatcactgctggaactgtaacatttggtgg |
8285955 |
T |
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