View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_47 (Length: 475)
Name: NF1126_low_47
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 231 - 418
Target Start/End: Original strand, 3374270 - 3374457
Alignment:
| Q |
231 |
agtcaattttcatagatgatcaaaatgcatttggtcctaaatttcttttttaagctgacatggattttacctataaactttggtcagaagtatttcaatc |
330 |
Q |
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| T |
3374270 |
agtcaattttcatagatgatcaaaatgcatttggtcctaaatttcttttttaagctcacatggattttacctataaactttggtcagaagtatttcaatc |
3374369 |
T |
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| Q |
331 |
tctcccataaagtactcgcccaaccccaacttctgtagttggttgacaatgcagagctttataagatcctcatccatgggatatgcct |
418 |
Q |
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| T |
3374370 |
tctcccataaagtactcgcccaaccccaacttctgtagttggttgacaatgcagagctttataagatcctcatccatgggatatgcct |
3374457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 3374050 - 3374242
Alignment:
| Q |
30 |
aattttgttccttactataattcctaaaattaaatatcaatcaaatattagttaaataatatatacagtttattttacatggtgaagacaaataatatat |
129 |
Q |
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| T |
3374050 |
aattttgttccttactataattcctaatattaaatatcaatcaaatattagttaaataatatatatagtttattttacatggtgaagacaaataatatat |
3374149 |
T |
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| Q |
130 |
tcctaattatcacaattatgttccttattataattctatacattggctgcaaattcgttggatatgagtgcaagtaaacgtagttacacctta |
222 |
Q |
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| T |
3374150 |
tcctaattatcacagttatgttccttattataattctatacattggctgcaaattcgttggatatgagtgcaagtaaacgtagttacacctta |
3374242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 3348875 - 3349005
Alignment:
| Q |
286 |
tgacatggattttacctataaactttggtcagaagtatttcaatctctcccataaagtactcgcccaaccccaacttctgtagttggttgacaatgcaga |
385 |
Q |
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| T |
3348875 |
tgacatgggttttacctataaacttgtgccaaaaatacttcaatctctcccacaaagtactctcccaatccaaacttctgtagttggttagcaatgcaga |
3348974 |
T |
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| Q |
386 |
gctttataagatcctcatccatgggatatgc |
416 |
Q |
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| T |
3348975 |
gtttaatatgatcttcgtccattggatatgc |
3349005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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