View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_53 (Length: 457)
Name: NF1126_low_53
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_53 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 27444690 - 27444922
Alignment:
| Q |
30 |
tgattcatcaagaggaagtgtttaaagagacgcttgttagcatgaaacaaaaaattaataatattgcttaccgttttctttaggtatggagtaatatagt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444690 |
tgattcatcaagaggaagtgtttaaagaggcgcttgttagcatgaaacaaaaaattaataatattgcttaccgttttctttaggtatggagtaatatagt |
27444789 |
T |
|
| Q |
130 |
gcccactctttttcaaggtttcaaaagcaacttcattcacaaagttatagagtgcatgaaagcatattttcatgtagtatgggagaaattccatggcact |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444790 |
gcccactctttttcaaggtttcaaaagcaacttcattcacaaagttatagagtgcatgaaagcatattttcatgtagtatgggagaaattccatggcact |
27444889 |
T |
|
| Q |
230 |
tagatcccatctagaatcaccaacaaaatattg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27444890 |
tagatcccatctagaatcaccaacaaaatattg |
27444922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 27444997 - 27445109
Alignment:
| Q |
337 |
caactacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattaaccttt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27444997 |
caactacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattgaccttt |
27445096 |
T |
|
| Q |
437 |
gtcatttcttttc |
449 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27445097 |
gtcatttcttttc |
27445109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 85 - 262
Target Start/End: Original strand, 27326277 - 27326454
Alignment:
| Q |
85 |
taataatattgcttaccgttttctttaggtatggagtaatatagtgcccactctttttcaaggtttcaaaagcaacttcattcacaaagttatagagtgc |
184 |
Q |
| |
|
|||| ||| ||||||||| ||| || ||||||||||| |||| || ||||| ||||||||||||||||||||||| ||||||||| |||| |||||| || |
|
|
| T |
27326277 |
taatgataatgcttaccgcttttttcaggtatggagtgatatggtacccacactttttcaaggtttcaaaagcaagttcattcactaagtcatagagagc |
27326376 |
T |
|
| Q |
185 |
atgaaagcatattttcatgtagtatgggagaaattccatggcacttagatcccatctagaatcaccaacaaaatattg |
262 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| | ||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27326377 |
atgaaagcacattttcatgtagtttgggagagaatccattgcatttagatcccatctagaatcaccaacaaaatattg |
27326454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 27326520 - 27326587
Alignment:
| Q |
341 |
tacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatc |
408 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
27326520 |
tacctatcaattgcttttgtgaagagctctagttcttccaatgtgccatacacatcgtacacatcatc |
27326587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 252
Target Start/End: Complemental strand, 18844081 - 18843965
Alignment:
| Q |
136 |
tctttttcaaggtttcaaaagcaacttcattcacaaagttatagagtgcatgaaagcatattttcatgtagtatgggagaaattccatggcacttagatc |
235 |
Q |
| |
|
||||||||||| ||||||||| || ||| ||||| ||||| || | |||||||||||||||| |||||||||||||||| | |||| |||| | | ||| |
|
|
| T |
18844081 |
tctttttcaagctttcaaaagaaatttcgttcacgaagttgtaaaccgcatgaaagcatatttgcatgtagtatgggagagaatccaaggcattcaaatc |
18843982 |
T |
|
| Q |
236 |
ccatctagaatcaccaa |
252 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18843981 |
ccatctagaatcaccaa |
18843965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 441
Target Start/End: Complemental strand, 18843883 - 18843783
Alignment:
| Q |
341 |
tacctatcaattgctttagtgaagagttgtagttcttccaaggtaccatatacatcatacacgtcatcgattgaggtaataagtgcattaacctttgtca |
440 |
Q |
| |
|
||||||||||| |||| |||||||| | |||||||||| ||| ||||| | ||||||||| ||||| | || |||||| | |||||| | |||||||| |
|
|
| T |
18843883 |
tacctatcaatagcttctgtgaagagctcaagttcttccagggtgccatacaaatcatacacatcatcaactgtggtaattaatgcattgatctttgtca |
18843784 |
T |
|
| Q |
441 |
t |
441 |
Q |
| |
|
| |
|
|
| T |
18843783 |
t |
18843783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University