View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_55 (Length: 450)
Name: NF1126_low_55
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_55 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Original strand, 11196718 - 11197124
Alignment:
| Q |
30 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196718 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtc |
11196817 |
T |
|
| Q |
130 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196818 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatca |
11196917 |
T |
|
| Q |
230 |
aaaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196918 |
aaaatgaaaacatgtctacatccatgattaaaaggtttcatgtca--agaccatatgcaattgcagctgcagaaggctcattgattattcgcataacatt |
11197015 |
T |
|
| Q |
330 |
gaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197016 |
gaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
11197115 |
T |
|
| Q |
430 |
taagcttca |
438 |
Q |
| |
|
||||||||| |
|
|
| T |
11197116 |
taagcttca |
11197124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Original strand, 11156265 - 11156671
Alignment:
| Q |
30 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156265 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactcattcacaaaatggttcaccattgtattatcaaagtc |
11156364 |
T |
|
| Q |
130 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatca |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
11156365 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcctaaatca |
11156464 |
T |
|
| Q |
230 |
aaaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacatt |
329 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156465 |
aaaatgaaaacatgtttacatccatgattaaaaggtttcatgtca--agaccatatgcaattgcagctgcagaaggctcattgattattcgcataacatt |
11156562 |
T |
|
| Q |
330 |
gaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
429 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156563 |
gaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
11156662 |
T |
|
| Q |
430 |
taagcttca |
438 |
Q |
| |
|
||| ||||| |
|
|
| T |
11156663 |
taaacttca |
11156671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Original strand, 11199883 - 11200293
Alignment:
| Q |
30 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtc |
129 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199883 |
acttctacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtc |
11199982 |
T |
|
| Q |
130 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatca |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
11199983 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacctaaataa |
11200082 |
T |
|
| Q |
230 |
aaaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacatt |
329 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11200083 |
aaaatgaaaacatttctacatccatgattaaaaggtttcatgtca--agaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacatt |
11200180 |
T |
|
| Q |
330 |
gaggccagcaataacacccgcatctcgagtggactgg----cgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatcc |
425 |
Q |
| |
|
||||||||||||| |||||||||||| ||| |||||| |||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11200181 |
gaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatcc |
11200280 |
T |
|
| Q |
426 |
aaggtaagcttca |
438 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11200281 |
aaggtaagcttca |
11200293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 32 - 438
Target Start/End: Original strand, 11161134 - 11161550
Alignment:
| Q |
32 |
ttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtctt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161134 |
ttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtctt |
11161233 |
T |
|
| Q |
132 |
gtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaa |
231 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
11161234 |
gtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaataaaa |
11161333 |
T |
|
| Q |
232 |
aatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggc--------tcattgattattcgcat |
323 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||| |||||||||| |||||| |
|
|
| T |
11161334 |
aatgaaaacatgtatacatccatgattaaaaggtttcatgtca--agaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcat |
11161431 |
T |
|
| Q |
324 |
aacattgaggccagcaataacacccgcatctcgagtggactgg----cgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgt |
419 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||| |||||| |||||||| |||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
11161432 |
aacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgt |
11161531 |
T |
|
| Q |
420 |
tgatccaaggtaagcttca |
438 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11161532 |
tgatccaaggtaagcttca |
11161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 31 - 429
Target Start/End: Original strand, 11170566 - 11170962
Alignment:
| Q |
31 |
cttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtct |
130 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11170566 |
cttcagcctcctaatggctcttggatctccactaatgtcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
11170665 |
T |
|
| Q |
131 |
tgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaa |
230 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
11170666 |
tgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaa |
11170765 |
T |
|
| Q |
231 |
aaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattg |
330 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| ||| | |||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
11170766 |
aaatgaaaacatttctacatccatgattaaatggtttcaagtca--aggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattg |
11170863 |
T |
|
| Q |
331 |
aggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
429 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
11170864 |
aggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaagg |
11170962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 31 - 429
Target Start/End: Original strand, 11209388 - 11209784
Alignment:
| Q |
31 |
cttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtct |
130 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11209388 |
cttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
11209487 |
T |
|
| Q |
131 |
tgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaa |
230 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
11209488 |
tgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaa |
11209587 |
T |
|
| Q |
231 |
aaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattg |
330 |
Q |
| |
|
| |||||||||| ||||| |||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
11209588 |
atatgaaaacatttctacgtccatgattaaatggtttcatgcca--aagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattg |
11209685 |
T |
|
| Q |
331 |
aggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
429 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
11209686 |
aggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaagg |
11209784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 31 - 429
Target Start/End: Original strand, 11275950 - 11276346
Alignment:
| Q |
31 |
cttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtct |
130 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11275950 |
cttcagcctcctaatggctcttggatctccactaatgtcatttttatgcttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
11276049 |
T |
|
| Q |
131 |
tgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaa |
230 |
Q |
| |
|
|||||||| ||||||||||||||| |||| ||||||||||||||| |||| |||||||| ||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
11276050 |
tgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaa |
11276149 |
T |
|
| Q |
231 |
aaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattg |
330 |
Q |
| |
|
| |||||||||| |||||||||||||||||| |||||| | | | |||||||||||||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
11276150 |
atatgaaaacatttctacatccatgattaaatggtttcgtgtta--aagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgttt |
11276247 |
T |
|
| Q |
331 |
aggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
429 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
11276248 |
aggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaagg |
11276346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 158 - 438
Target Start/End: Complemental strand, 11241491 - 11241213
Alignment:
| Q |
158 |
atcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgat |
257 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
11241491 |
atcgccttaacattgatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgat |
11241392 |
T |
|
| Q |
258 |
taaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcga |
357 |
Q |
| |
|
||| || |||||| | | | ||||||||||||||| |||||| ||||||| ||||||||| || ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
11241391 |
taagagttttcatgttaa--ggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcga |
11241294 |
T |
|
| Q |
358 |
gtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca |
438 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241293 |
atagactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca |
11241213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 437
Target Start/End: Original strand, 11132989 - 11133394
Alignment:
| Q |
30 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtc |
129 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11132989 |
acttcaaccgtctaagggcttttcgatctccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtc |
11133088 |
T |
|
| Q |
130 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatca |
229 |
Q |
| |
|
||||||||| |||||||| ||||| ||| | || ||| |||| || || || ||||||||||| ||||| |||| |||||||| ||||||||| |
|
|
| T |
11133089 |
ttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaatgtaccacctcctaaatca |
11133188 |
T |
|
| Q |
230 |
aaaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacatt |
329 |
Q |
| |
|
|||| ||||||||| || |||||||||| |||||| | ||| |||||||||||||||||||||| | |||||| ||||||||||||||||| || |
|
|
| T |
11133189 |
aaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaa--gaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgtt |
11133286 |
T |
|
| Q |
330 |
gaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
429 |
Q |
| |
|
||| || ||||||||||| ||||||| ||| | |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11133287 |
gagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaagg |
11133386 |
T |
|
| Q |
430 |
taagcttc |
437 |
Q |
| |
|
||| |||| |
|
|
| T |
11133387 |
taaacttc |
11133394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 11314906 - 11314688
Alignment:
| Q |
30 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtc |
129 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||| ||||||||| || || |||| ||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
11314906 |
acttcaacctcctaagggatgttaaatctccactaatgtctattttatacctcttccggaacacttccacaaaatatttcaccattgtattattgaagtc |
11314807 |
T |
|
| Q |
130 |
ttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatca |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||| ||||| ||||| ||||||| ||||||||| ||||| |||| |||||| ||||| ||||| |
|
|
| T |
11314806 |
ttgtcccccaaggtgagtgtctccgccaacggccctaactttgatggcaccattctcaagtgtgagaatagacacatccaaagtaccgccacccaaatcg |
11314707 |
T |
|
| Q |
230 |
aaaatgaaaacatgtctac |
248 |
Q |
| |
|
|| |||||||||| ||||| |
|
|
| T |
11314706 |
aagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 11241595 - 11241511
Alignment:
| Q |
30 |
acttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241595 |
acttcaacctcctaagggctcttggatctctactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 31 - 429
Target Start/End: Original strand, 884 - 1277
Alignment:
| Q |
31 |
cttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtct |
130 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
884 |
cttcagcctcctaacggctcttggatctccactaatgtcgattttatacttccttaagaacactttcacaaaatggttcaccattgcgttatcaaagtct |
983 |
T |
|
| Q |
131 |
tgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaa |
230 |
Q |
| |
|
|| |||| ||||||||||||||| |||| ||||||||||||||| |||| ||||||||| |||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
984 |
tgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacctaagtcaa |
1083 |
T |
|
| Q |
231 |
aaatgaaaacatgtctacatccatgattaaaaggtttcatctcactcgaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattg |
330 |
Q |
| |
|
|||||||||||| |||| |||||| | ||||| | ||| |||||||||||||||||||||| ||||||||||| ||||| || ||||||| |
|
|
| T |
1084 |
aaatgaaaacatttctatgtccatg---tgatggttttgtgtca--aagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattg |
1178 |
T |
|
| Q |
331 |
aggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaagg |
429 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1179 |
aggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaagg |
1277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 12528558 - 12528622
Alignment:
| Q |
89 |
aactctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcc |
153 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
12528558 |
aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctcc |
12528622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 12528747 - 12528820
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
353 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||| || || ||||||||||||||||| ||||| ||||| |
|
|
| T |
12528747 |
ccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatc |
12528820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 7542224 - 7542340
Alignment:
| Q |
33 |
tcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttg |
132 |
Q |
| |
|
|||||||||| | |||| |||||| ||||||||||| | ||| | ||| ||| |||||||| ||||| | |||| ||||| ||||||||||||||| |
|
|
| T |
7542224 |
tcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcgccattctattatcaaagtcttc |
7542323 |
T |
|
| Q |
133 |
tcccccaaggtgagtgt |
149 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
7542324 |
tccaccaaggtgagtgt |
7542340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 398
Target Start/End: Original strand, 7542510 - 7542587
Alignment:
| Q |
321 |
cataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagt |
398 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| | ||||| || |||||||| |||||||| ||||| |
|
|
| T |
7542510 |
cataacattgaggccagcaatggcacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacagt |
7542587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 29577594 - 29577531
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataa |
343 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaataa |
29577531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
354 |
Q |
| |
|
||||| ||||| || || |||| ||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
3147515 |
ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct |
3147589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 8382801 - 8382727
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
354 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8382801 |
ccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 8602217 - 8602291
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
354 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
8602217 |
ccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 13333561 - 13333503
Alignment:
| Q |
98 |
acaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgc |
156 |
Q |
| |
|
||||||| |||||||||| | ||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
13333561 |
acaaaatagttcaccattctgttatcgaagtcttctcccccaaggtgagtgtttcctgc |
13333503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 7877903 - 7877783
Alignment:
| Q |
33 |
tcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaagtcttg |
132 |
Q |
| |
|
|||||||||||||||| || || | ||||| |||||| | ||||| ||||||| ||||| |||| |||||||||| |||| | ||||||||||| | |
|
|
| T |
7877903 |
tcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctc |
7877804 |
T |
|
| Q |
133 |
tcccccaaggtgagtgtctcc |
153 |
Q |
| |
|
||| || |||||||| ||||| |
|
|
| T |
7877803 |
tccacctaggtgagtatctcc |
7877783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 8538306 - 8538353
Alignment:
| Q |
307 |
tcattgattattcgcataacattgaggccagcaataacacccgcatct |
354 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8538306 |
tcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 27830981 - 27830910
Alignment:
| Q |
97 |
cacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaac |
168 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| | ||| ||||||||||||| ||| ||| | |||||||| |
|
|
| T |
27830981 |
cacaaaatagttcaccatcctattatcaaagtcctctccaccaaggtgagtgtttccagcagttgccttaac |
27830910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 3147335 - 3147397
Alignment:
| Q |
106 |
gttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaac |
168 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||| |||| |||||| || |||||||| |
|
|
| T |
3147335 |
gttcaccatcctattatcaaagtcctctcccccaaggtgggtgtttcctgcgatggccttaac |
3147397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 13333381 - 13333307
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
354 |
Q |
| |
|
||||||||||| || || |||| ||| |||||||||||||| || | ||| |||||||||||| |||| |||||| |
|
|
| T |
13333381 |
ccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 404
Target Start/End: Original strand, 6789782 - 6789879
Alignment:
| Q |
307 |
tcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataac |
404 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| |||| |||||| ||||| | ||||| || ||||| || |||||||||||||| ||||| |
|
|
| T |
6789782 |
tcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattgaaataagcaggcacagtaataac |
6789879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 10494299 - 10494226
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
353 |
Q |
| |
|
||||||||||| || || |||| ||| ||||||||||| || || ||||| |||||||||||| |||| ||||| |
|
|
| T |
10494299 |
ccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 30775495 - 30775556
Alignment:
| Q |
280 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
341 |
Q |
| |
|
||||||||||| || ||||||| |||||||| ||||||| ||||||||| || |||||||| |
|
|
| T |
30775495 |
ccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaat |
30775556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University