View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_56 (Length: 449)
Name: NF1126_low_56
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 372
Target Start/End: Original strand, 51616593 - 51616935
Alignment:
| Q |
30 |
atattatggttcatttggttgtttttcaacctccacgttcacactaccgtgtttgatttggttggaagagtatcttgagttttctggcagtttgtcattt |
129 |
Q |
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| T |
51616593 |
atattatggttcatttggttgtttttcaacctccacgttcacactaccgtgtttgatttggttggaagagtatcttgagttttctggcagtttgtcattt |
51616692 |
T |
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| Q |
130 |
ccatggtattccctctgtgaacttgtcctctggttagctatttcagtatttaaggtaagataaggttaggtgcatgttgtattcaagtcttaaatatact |
229 |
Q |
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| T |
51616693 |
ccatggtattccctctgtgaacttgtcctctggttagctatttcagtatttaaggtaagataaggttaggtgcatgttgtattcaagtcttaaatatact |
51616792 |
T |
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| Q |
230 |
aaaacaataaagatcttacacatagtacatggtatagttactatttttgatgttttcaccttgggttaaaacttgaaacaaatattttgttggtgcattt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51616793 |
aaaacaataaagatcttacacatagtacatggtatagttactatttttgatgttttcaccttgggttaaaacttgaaacaaatattttgttggtgcattt |
51616892 |
T |
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| Q |
330 |
gattcagcagtaattcaattttgactggtttattgtctgtggt |
372 |
Q |
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| T |
51616893 |
gattcagcagtaattcaattttgactggtttattgtctgtggt |
51616935 |
T |
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