View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_57 (Length: 442)
Name: NF1126_low_57
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_57 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 29 - 442
Target Start/End: Original strand, 2969776 - 2970186
Alignment:
| Q |
29 |
agtcttatcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggataatttctctctcttaaaagaggccttgcct |
128 |
Q |
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| T |
2969776 |
agtcttatcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggataatttctctctcttaaaagaggccttgcct |
2969875 |
T |
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| Q |
129 |
gcnnnnnnnnnnnttaaatatacaaagtaagaataatgttgcacttagaaatttgttgttttgatacgtggacaccggtaatatgcgttgatgtccaaca |
228 |
Q |
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| T |
2969876 |
gcaaaaaaaa---ttaaatatacaaagtaagaataatgttgcacttagaaatttgttattttgatacgtggacaccggtaatatgcgttgatgtccaaca |
2969972 |
T |
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| Q |
229 |
cgtgtcaaacactggacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctcca |
328 |
Q |
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| T |
2969973 |
cgtgtcaaacactagacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctcca |
2970072 |
T |
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| Q |
329 |
agtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcat |
428 |
Q |
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| T |
2970073 |
agtcttttgtctgtagttctcattccagtaataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcat |
2970172 |
T |
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| Q |
429 |
attctggtgccaaa |
442 |
Q |
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| T |
2970173 |
attctggtgccaaa |
2970186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 435
Target Start/End: Original strand, 2925368 - 2925482
Alignment:
| Q |
321 |
ttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccata |
420 |
Q |
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| T |
2925368 |
ttcctccaagtcttttgtcagtagtcctcattccggttattagctcaacaagaaccactccaaaagaatatacatctgttttatttgatactttaccata |
2925467 |
T |
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| Q |
421 |
ttctgcatattctgg |
435 |
Q |
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| T |
2925468 |
tgctgcatattctgg |
2925482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 440
Target Start/End: Complemental strand, 16330775 - 16330632
Alignment:
| Q |
297 |
ttgttacccatccaacaaggcttcttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatc |
396 |
Q |
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| T |
16330775 |
ttgttacccatcccacaagacttttgtgtccaattcttttgtctgtggtcctcattcctgttattaactgaagaagcactactccaaaggaatacacatc |
16330676 |
T |
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| Q |
397 |
tgttctacttgacaccttgccatattctgcatattctggtgcca |
440 |
Q |
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| T |
16330675 |
tgacttggttgacactttaccagattctgcatattctggtgcca |
16330632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 16331255 - 16331191
Alignment:
| Q |
35 |
atcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggata |
99 |
Q |
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| T |
16331255 |
atcatccaaaaaagctgatgacaatcataggtatccatcatcctttcatcaattagatctggata |
16331191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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