View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_6 (Length: 779)
Name: NF1126_low_6
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 562 - 779
Target Start/End: Original strand, 35804945 - 35805165
Alignment:
| Q |
562 |
gttggtggtacggtgagttttctcttcacgtgggaaaaaagtttttctattgcattaaaatggaattcctctaaaacaaaca---ttgtgcaagattctc |
658 |
Q |
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| T |
35804945 |
gttgatggtacggtgagttttctcttcacgtgggaaaaaagtttttctattgcattaaaatggaattcctctaaaacaaacaacattgtgcaagattctc |
35805044 |
T |
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| Q |
659 |
gttcttctttttcatgatattatttattcttgagaataaatttctcttccataaaacaaacatttcctactctttctgtttaaacagaaacataaggatt |
758 |
Q |
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| T |
35805045 |
gttcttctttttcatgatattatttattcttgagaataaatttctcttccataaaacaaacattccctactctttctgtttaaacagaaacaaaaggatt |
35805144 |
T |
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| Q |
759 |
aagattctcttctcccttttt |
779 |
Q |
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| T |
35805145 |
aagattctcttctcccttttt |
35805165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 371 - 480
Target Start/End: Original strand, 35804750 - 35804865
Alignment:
| Q |
371 |
aatttttcgtgggaacaatttttattccctttataaca------tgaatttattagtccatccttgaattctcggaaatatctttagcatccatgaaaca |
464 |
Q |
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| T |
35804750 |
aatttttcgtgggaacaatttttattccctttataacaaacacatgaatttattagtccatccttgaattctcggaaatatctttagcatccatgaaaca |
35804849 |
T |
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| Q |
465 |
aacacatatattgtag |
480 |
Q |
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| T |
35804850 |
aacacatatattgtag |
35804865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 35804149 - 35804256
Alignment:
| Q |
92 |
actatcaatcccccaagcatcagtggctatagctctttgtataatatta---taataataattctgtaaagccatacccaaagacttaccctcaaaataa |
188 |
Q |
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| T |
35804149 |
actatcaatcccccaagcatcagtggctatagctctttgtataataataatataataataattctgtaaagccatacccaaagacttaccttcaaaataa |
35804248 |
T |
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| Q |
189 |
gatcaatg |
196 |
Q |
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| T |
35804249 |
gatcaatg |
35804256 |
T |
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