View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_61 (Length: 440)
Name: NF1126_low_61
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_61 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 431
Target Start/End: Original strand, 33485208 - 33485606
Alignment:
| Q |
30 |
gcatcttcaatagctagttaactacct-tgaagtgtttgacaagaactttgtaaagaacaattttgttgataggctttgcaatcattattatttgatctc |
128 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33485208 |
gcatcttcaatagctagttaactacctctggagtgtttgacaagaactttgtaaagaacaattttgttcataggctttgcaatcattattatttgatctc |
33485307 |
T |
|
| Q |
129 |
gaataagttcaagtcgacctttgttcatatgttgagtgcttgagattgtcttcaaatcttgaatcagtttgcaagactccattcctccatgtaactactc |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33485308 |
gaataagtttaagtcgacctttgttcatatgttgagtgcttgagattgtcttcaaatctttaatcagtttgcaagactccattcctctgtgtaactactc |
33485407 |
T |
|
| Q |
229 |
cctgaaaaaagttgtataaaccaggccaacacaacaatagaagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatgg |
328 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33485408 |
cctgaaaaaagttgtataaa-----ccaacacaacaatagaagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatgg |
33485502 |
T |
|
| Q |
329 |
atacaactttttcagatatggttttccctctca-nnnnnnnaagatcccttgattgataaaagacgatgaagatttgagtttttatttgggaatttatat |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
33485503 |
atacaactttttcagatatggttttccctctcattttttttaagatcccttgattgataaaagacgatgaagatttgagtttttctttgggaatttatgt |
33485602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 49861753 - 49861692
Alignment:
| Q |
162 |
gagtgcttgagattgtcttcaaatcttgaatcagtttgcaa-gactccattcctccatgtaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
49861753 |
gagtgcttgagattgtcttcaaatcttgaatcagtttgcaatgactccattcctccctgtaa |
49861692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 49862259 - 49862177
Alignment:
| Q |
30 |
gcatcttcaatagctagttaactacct-tgaagtgtttgacaagaactttgtaaagaacaattttgttgataggctttgcaat |
111 |
Q |
| |
|
|||||| |||||||||||| |||| || || |||||||||||||| ||| |||||||||| ||||||| |||| ||| ||||| |
|
|
| T |
49862259 |
gcatctccaatagctagttgactatctctggagtgtttgacaagagcttcgtaaagaacagttttgttcatagacttagcaat |
49862177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 3561 - 3473
Alignment:
| Q |
269 |
aagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatggatacaactttttcagatatggttttccctctca |
361 |
Q |
| |
|
|||| |||||||||||||||||||| || | |||||||||||| || |||| |||| |||||||||||||| ||||| ||||| |||||| |
|
|
| T |
3561 |
aaggaaggagaagaaattcaaagtttttca----acaagaacatcaagaagaagagatgaatacaactttttcaaatatgattttctctctca |
3473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 11217 - 11129
Alignment:
| Q |
269 |
aagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatggatacaactttttcagatatggttttccctctca |
361 |
Q |
| |
|
|||| |||||||||||||||||||| || | |||||||||||| || |||| |||| |||||||||||||| ||||| ||||| |||||| |
|
|
| T |
11217 |
aaggaaggagaagaaattcaaagtttttca----acaagaacatcaagaagaagagatgaatacaactttttcaaatatgattttctctctca |
11129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 6509537 - 6509449
Alignment:
| Q |
269 |
aagggaggagaagaaattcaaagttcttgattgaacaagaacatcatgaggaagggatggatacaactttttcagatatggttttccctctca |
361 |
Q |
| |
|
|||| |||||||||||||||||||| || | |||||||||||| || |||| |||| |||||||||||||| ||||| ||||| |||||| |
|
|
| T |
6509537 |
aaggaaggagaagaaattcaaagtttttca----acaagaacatcaagaagaagagatgaatacaactttttcaaatatgattttctctctca |
6509449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University