View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_64 (Length: 431)
Name: NF1126_low_64
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 30 - 417
Target Start/End: Original strand, 4951750 - 4952137
Alignment:
| Q |
30 |
atggatcatagaaaattaaaaagaaggaacatagagtaatttatatctttataatggaaactggaaaatagtctcatctcattctcaatcatgaatttta |
129 |
Q |
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| T |
4951750 |
atggatcatagaaagttaaaaagaaggaacatagagtaatttatatctttataatggaaactagaaaatagtctcatctcattctcaatcatgaatttta |
4951849 |
T |
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| Q |
130 |
gaggaatcatctttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccattt |
229 |
Q |
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| T |
4951850 |
gaggaatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaatttgcatgtcagctaccattt |
4951949 |
T |
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| Q |
230 |
gacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcagacacatggtttagtttgtcaacaaggttgtgatt |
329 |
Q |
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| T |
4951950 |
gacgaagatcaaaagtttcttctttaagtcgtgcattctcttgaacaactgtgtcatgtgactcagacacatggtttagtttgtcaacaaggttgtgatt |
4952049 |
T |
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| Q |
330 |
ttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgttttctcatccttgatctcctagctgattctctgttt |
417 |
Q |
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| T |
4952050 |
ttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgtttcctcatccttgatctcctagctgattctctgttt |
4952137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 112 - 413
Target Start/End: Complemental strand, 10483843 - 10483539
Alignment:
| Q |
112 |
tctcaatcatgaattttagaggaatcatc---tttatgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
208 |
Q |
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| T |
10483843 |
tctcaatcatgaattttagaggaatcatcatctttgtgttgagatgtgttgcatggaatttcacataaatcttccatgttgcaaggaaaagagttaccaa |
10483744 |
T |
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| Q |
209 |
tttgcatgtcagctaccatttgacgaagatcaaaagtttcttctttaagacgtgtattctcttgaacaactttgtcatgggactcagacacatggtttag |
308 |
Q |
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| T |
10483743 |
tttgcatgtcagctaccatttggcgaagatcaaaagtttcttccttaagtcttgcattctcttgaacaactttgtcatgtgactcagacacatggtttag |
10483644 |
T |
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| Q |
309 |
tttgtcaacaaggttgtgattttcagttctgagtttcatcacttgtgaccaaagttcatccaagtgtttttgttttctcatccttgatctcctagctgat |
408 |
Q |
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||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |
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| T |
10483643 |
tttatcaacaaggttatgattttcagttctgagtctcaccacttgtgaccaaagttcatctaagtgcttttgtttcctcatccttgatctcctagctgat |
10483544 |
T |
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| Q |
409 |
tctct |
413 |
Q |
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||||| |
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| T |
10483543 |
tctct |
10483539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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