View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_65 (Length: 430)

Name: NF1126_low_65
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_65
NF1126_low_65
[»] chr2 (20 HSPs)
chr2 (18-195)||(28216069-28216246)
chr2 (192-333)||(28215907-28216048)
chr2 (304-430)||(28215914-28216040)
chr2 (227-331)||(28220119-28220227)
chr2 (331-430)||(28220119-28220222)
chr2 (291-336)||(32309070-32309115)
chr2 (291-336)||(32799951-32799996)
chr2 (296-336)||(32565720-32565760)
chr2 (296-336)||(32806905-32806945)
chr2 (296-336)||(32815342-32815382)
chr2 (200-232)||(32309083-32309115)
chr2 (200-232)||(32565720-32565752)
chr2 (200-232)||(32799951-32799983)
chr2 (200-232)||(32806905-32806937)
chr2 (200-232)||(32815342-32815374)
chr2 (395-430)||(32309070-32309105)
chr2 (395-430)||(32799961-32799996)
chr2 (400-430)||(32565730-32565760)
chr2 (400-430)||(32806915-32806945)
chr2 (400-430)||(32815352-32815382)
[»] chr6 (2 HSPs)
chr6 (296-336)||(301229-301269)
chr6 (200-232)||(301237-301269)
[»] chr4 (1 HSPs)
chr4 (24-62)||(21453239-21453277)
[»] chr3 (1 HSPs)
chr3 (24-65)||(26774263-26774304)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
Q  18 ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28216246 ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 28216147  T
Q  118 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28216146 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta 28216069  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 28216048 - 28215907
Alignment:
Q  192 gttataaaaagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcccgcttctattctcttctccttcactccagc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28216048 gttataaaaagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcctgcttctattctcttctccttcactccagc 28215949  T
Q  292 atcatcatcatcaagaaaatgaggagattcttcatcttcaac 333  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28215948 atcatcatcatcaagaaaatgaggagattcttcatcttcaac 28215907  T

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Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 304 - 430
Target Start/End: Complemental strand, 28216040 - 28215914
Alignment:
Q  304 aagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcccgcttctattctcttctccttcactccagcatcatcat 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28216040 aagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcctgcttctattctcttctccttcactccagcatcatcat 28215941  T
Q  404 catcaagaaaatgaggagattcttcat 430  Q
    |||||||||||||||||||||||||||    
T  28215940 catcaagaaaatgaggagattcttcat 28215914  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 28220119 - 28220227
Alignment:
Q  227 aacccaataacttcccaaacaagtcttcact--ttcccgcttct--attctcttctccttcactccagcatcatcatcatcaagaaaatgaggagattct 322  Q
    |||| |||||||||||||||||||||  |||  |||||||||||  || ||||||||||||| ||||||||||| ||||||||||||||||||||| |||    
T  28220119 aacctaataacttcccaaacaagtctctactctttcccgcttctttatcctcttctccttcaatccagcatcattatcatcaagaaaatgaggagaatct 28220218  T
Q  323 tcatcttca 331  Q
    |||||||||    
T  28220219 tcatcttca 28220227  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 430
Target Start/End: Original strand, 28220119 - 28220222
Alignment:
Q  331 aacccaataacttcccaaacaagtcttcact--ttcccgcttct--attctcttctccttcactccagcatcatcatcatcaagaaaatgaggagattct 426  Q
    |||| |||||||||||||||||||||  |||  |||||||||||  || ||||||||||||| ||||||||||| ||||||||||||||||||||| |||    
T  28220119 aacctaataacttcccaaacaagtctctactctttcccgcttctttatcctcttctccttcaatccagcatcattatcatcaagaaaatgaggagaatct 28220218  T
Q  427 tcat 430  Q
    ||||    
T  28220219 tcat 28220222  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 32309070 - 32309115
Alignment:
Q  291 catcatcatcatcaagaaaatgaggagattcttcatcttcaaccca 336  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  32309070 catcttcatcatcaagaaaatgaggagattcttcatcttcaaccca 32309115  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 32799996 - 32799951
Alignment:
Q  291 catcatcatcatcaagaaaatgaggagattcttcatcttcaaccca 336  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  32799996 catcttcatcatcaagaaaatgaggagattcttcatcttcaaccca 32799951  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 32565760 - 32565720
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaaccca 336  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32565760 tcatcatcaagaaaatgaggagattcttcatcttcaaccca 32565720  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 32806945 - 32806905
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaaccca 336  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32806945 tcatcatcaagaaaatgaggagattcttcatcttcaaccca 32806905  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 32815382 - 32815342
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaaccca 336  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32815382 tcatcatcaagaaaatgaggagattcttcatcttcaaccca 32815342  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 32309083 - 32309115
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32309083 aagaaaatgaggagattcttcatcttcaaccca 32309115  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32565752 - 32565720
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32565752 aagaaaatgaggagattcttcatcttcaaccca 32565720  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32799983 - 32799951
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32799983 aagaaaatgaggagattcttcatcttcaaccca 32799951  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32806937 - 32806905
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32806937 aagaaaatgaggagattcttcatcttcaaccca 32806905  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32815374 - 32815342
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32815374 aagaaaatgaggagattcttcatcttcaaccca 32815342  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 430
Target Start/End: Original strand, 32309070 - 32309105
Alignment:
Q  395 catcatcatcatcaagaaaatgaggagattcttcat 430  Q
    |||| |||||||||||||||||||||||||||||||    
T  32309070 catcttcatcatcaagaaaatgaggagattcttcat 32309105  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 430
Target Start/End: Complemental strand, 32799996 - 32799961
Alignment:
Q  395 catcatcatcatcaagaaaatgaggagattcttcat 430  Q
    |||| |||||||||||||||||||||||||||||||    
T  32799996 catcttcatcatcaagaaaatgaggagattcttcat 32799961  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 430
Target Start/End: Complemental strand, 32565760 - 32565730
Alignment:
Q  400 tcatcatcaagaaaatgaggagattcttcat 430  Q
    |||||||||||||||||||||||||||||||    
T  32565760 tcatcatcaagaaaatgaggagattcttcat 32565730  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 430
Target Start/End: Complemental strand, 32806945 - 32806915
Alignment:
Q  400 tcatcatcaagaaaatgaggagattcttcat 430  Q
    |||||||||||||||||||||||||||||||    
T  32806945 tcatcatcaagaaaatgaggagattcttcat 32806915  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 430
Target Start/End: Complemental strand, 32815382 - 32815352
Alignment:
Q  400 tcatcatcaagaaaatgaggagattcttcat 430  Q
    |||||||||||||||||||||||||||||||    
T  32815382 tcatcatcaagaaaatgaggagattcttcat 32815352  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 301229 - 301269
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaaccca 336  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  301229 tcatcatcaagaaaatgagaagattcttcatcttcaaccca 301269  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 301237 - 301269
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    ||||||||||| |||||||||||||||||||||    
T  301237 aagaaaatgagaagattcttcatcttcaaccca 301269  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
Q  24 ttttcattaggtagctcatccttatgatgagtgagtagt 62  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  21453239 ttttcattgggtagctcatccttgtgatgagtgagtagt 21453277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
Q  24 ttttcattaggtagctcatccttatgatgagtgagtagttcc 65  Q
    |||||| || |||| |||||||||||||||||||||||||||    
T  26774263 ttttcactacgtagttcatccttatgatgagtgagtagttcc 26774304  T

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