View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_66 (Length: 428)
Name: NF1126_low_66
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_66 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 43053509 - 43053094
Alignment:
| Q |
13 |
gctgttgccaatgcttgaaagaacaggaaaatcttcctttgagagctcaaaggacttggaattcttatcattcatgacagtctcaggaggaacctcttct |
112 |
Q |
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| T |
43053509 |
gctgttgccaatgcttgaaagaacaggaaaatcttcctttgagagctcaaaggacttggaattcttatcattcatgacagtctcaggaggaacctcttct |
43053410 |
T |
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| Q |
113 |
atttgttttctcttggatgaagcnnnnnnnnnnnnnnnnnncgcacgactggatcttcttggcctggaccctcttgcacgggtgttccagttggtagtaa |
212 |
Q |
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| T |
43053409 |
atttgttttctcttggatgaagcattattattattattattcgcacggctggatcttcttggcctggaccctcttgcacgggcgttccagttggtagtaa |
43053310 |
T |
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| Q |
213 |
gagtctgagtcagaaacatccnnnnnnntttaggatgatattctgagttatcataatataatataaataaagtttgaaaacaaaagcaatttaccatgtc |
312 |
Q |
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| T |
43053309 |
gagtctgagtcagaaacatccaaaaaaatttaggatgatatactgagttatcataatataatataaataaagtttgaaaacaaaagcaatttaccatgtc |
43053210 |
T |
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| Q |
313 |
aggtatgtaagtgcctgttcctcgcgatttccttatttcgtcaaggccataagttggttgtggaggaacatttggatgaaagaatgtctgactcggcaca |
412 |
Q |
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| T |
43053209 |
aggtatgtaagtgcctgttcctcgcgatttccttatttcgtcaaggccataagttggttgtggaggaacatttggatgaaagaatgtctgactcggcaca |
43053110 |
T |
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| Q |
413 |
taataatcagcacttc |
428 |
Q |
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| T |
43053109 |
taataatcagcacttc |
43053094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 154 - 425
Target Start/End: Complemental strand, 43037137 - 43036867
Alignment:
| Q |
154 |
cgcacgactggatcttcttggcctggaccctcttgcacgggtgttccagttggtagtaagagtctgagtcagaaacatccnnnnnnntttaggatgatat |
253 |
Q |
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| T |
43037137 |
cgcacggctggatctccttggcatggaccctcttgcacgggtgttccagtaggtagtaagagtctgaatcagaaacatccaaaaacatttaggttgatat |
43037038 |
T |
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| Q |
254 |
tctgagttatcataatataatataaataaagtttgaaaacaaaagcaatttaccatgtcaggtatgtaagtgcctgttcctcgcgatttccttatttcgt |
353 |
Q |
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| T |
43037037 |
aatcagttattataatataatataaataaagtttgaaaacaaa-gcaatttaccatgtcaggtatgtaagtgcctgttcctcgcgatttccctatttctt |
43036939 |
T |
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| Q |
354 |
caaggccataagttggttgtggaggaacatttggatgaaagaatgtctgactcggcacataataatcagcac |
425 |
Q |
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| T |
43036938 |
caaggccataagttggttgtggaggaacattcggatgaaagaatgtctgactcggcacatataaatcagcac |
43036867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 43037323 - 43037201
Alignment:
| Q |
13 |
gctgttgccaatgcttgaaagaacaggaaaatcttcctttgagagctcaaaggacttggaattcttatcattcatgacagtctcaggaggaacctcttct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43037323 |
gctgttgccaatgcttgaaagaacaggaaaatcttcctttgagagctcaaaggacttggaattcttatcattcatgtcagtctcaggaggaacctcttct |
43037224 |
T |
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| Q |
113 |
atttgttttctcttggatgaagc |
135 |
Q |
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| T |
43037223 |
atttgttttctcttggatgaagc |
43037201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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