View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_75 (Length: 410)
Name: NF1126_low_75
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_75 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 4023760 - 4024136
Alignment:
| Q |
30 |
ggccctatgaagctgattaataattaatgtggctggtttttagttgctttcaagcattaataagtgccatgcgtgtatatgtagggtaagtgctactaaa |
129 |
Q |
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| T |
4023760 |
ggccctatgaagctgattaataattaatgtggctggtttttagttgctttcaagcattaataagtgccatgcgtgtatatgtagggtaagtgctactaaa |
4023859 |
T |
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| Q |
130 |
tagtgcacaaatgagttaggtgttatgttatccacaaatctgcttgcagcgttgaatcaataaattttattatcagatcaaatgagatacgataagattt |
229 |
Q |
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| T |
4023860 |
tagtgcacaaatgagttaggtgttatgttatccacaaatttgcttccatcgttgaatcaataaattttattatcagatcaaatgagatacgataagattt |
4023959 |
T |
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| Q |
230 |
attactcgaagaacaacttatgtgcgatataactcatgaaacacggatacagacacgacatagacaccgacataactaataatttnnnnnnnnnntgaca |
329 |
Q |
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| T |
4023960 |
attactcgaagaacaacttatgtgcgatataactcatg-aacacggattcggacacgacatagacaccgacacaactaataattt---aaaaaaatgaca |
4024055 |
T |
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| Q |
330 |
taattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtctaatctg |
410 |
Q |
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| T |
4024056 |
taatttaatataattataagtatcggcgtcgtatcgatgtcggatacgacacatatccgataataggacatgtctaatctg |
4024136 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 408
Target Start/End: Original strand, 22652002 - 22652083
Alignment:
| Q |
327 |
acataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtctaatc |
408 |
Q |
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| T |
22652002 |
acataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatc |
22652083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 19312361 - 19312444
Alignment:
| Q |
327 |
acataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtctaatctg |
410 |
Q |
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| T |
19312361 |
acatgattcagtgtaattataagtatcggtgtcgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctg |
19312444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 322486 - 322535
Alignment:
| Q |
265 |
atgaaacacggatacagacacgacatagacaccgacataactaataattt |
314 |
Q |
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| T |
322486 |
atgaaacatggatacagacacgacacagacaccgacaccactaataattt |
322535 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 9629931 - 9629856
Alignment:
| Q |
329 |
ataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtct |
404 |
Q |
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| T |
9629931 |
ataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacgacacatgtccgacaccgggacacgtct |
9629856 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 40131647 - 40131725
Alignment:
| Q |
327 |
acataattcaatataattataagtatcggcgtcgtatcgatgtcggatacgacatatatccgatactgggacacgtcta |
405 |
Q |
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| T |
40131647 |
acataattcagtttaattataaatatcggtgtcgtatcgatgtcagacacgacttgtgtctgacattgggacacgtcta |
40131725 |
T |
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