View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_79 (Length: 395)

Name: NF1126_low_79
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_79
NF1126_low_79
[»] chr2 (27 HSPs)
chr2 (29-281)||(16576247-16576498)
chr2 (148-395)||(16576303-16576549)
chr2 (77-274)||(38576810-38577006)
chr2 (154-393)||(38576726-38576955)
chr2 (154-356)||(9050074-9050276)
chr2 (126-275)||(35370403-35370552)
chr2 (29-261)||(9050119-9050351)
chr2 (166-275)||(16863461-16863570)
chr2 (154-263)||(28282667-28282776)
chr2 (29-104)||(38576931-38577006)
chr2 (166-232)||(17606589-17606655)
chr2 (324-394)||(38576726-38576796)
chr2 (324-392)||(9050074-9050142)
chr2 (29-105)||(16863461-16863537)
chr2 (336-395)||(17606589-17606648)
chr2 (37-275)||(34176709-34176948)
chr2 (29-100)||(35371121-35371192)
chr2 (324-394)||(28282706-28282776)
chr2 (40-105)||(35370403-35370468)
chr2 (206-320)||(35373664-35373781)
chr2 (36-150)||(35373664-35373781)
chr2 (29-93)||(28282667-28282731)
chr2 (296-395)||(35370453-35370552)
chr2 (198-270)||(35371121-35371193)
chr2 (207-395)||(34176759-34176948)
chr2 (30-94)||(2248931-2248995)
chr2 (141-260)||(25606386-25606506)
[»] chr5 (31 HSPs)
chr5 (137-309)||(2243248-2243425)
chr5 (29-266)||(40483696-40483931)
chr5 (190-392)||(40483739-40483940)
chr5 (29-139)||(2243310-2243425)
chr5 (34-262)||(22780174-22780401)
chr5 (307-395)||(2243248-2243336)
chr5 (164-307)||(17736713-17736856)
chr5 (154-264)||(7215417-7215527)
chr5 (30-92)||(22780339-22780401)
chr5 (151-260)||(41264393-41264503)
chr5 (129-239)||(17739907-17740018)
chr5 (133-394)||(7215224-7215487)
chr5 (299-394)||(17739922-17740018)
chr5 (155-281)||(973110-973236)
chr5 (29-137)||(17736748-17736856)
chr5 (158-224)||(17736852-17736918)
chr5 (328-394)||(17736852-17736918)
chr5 (156-270)||(41264539-41264653)
chr5 (29-94)||(7215462-7215527)
chr5 (29-90)||(41264393-41264454)
chr5 (321-393)||(41264430-41264503)
chr5 (179-263)||(2822597-2822681)
chr5 (204-395)||(22780174-22780364)
chr5 (325-395)||(973166-973236)
chr5 (165-234)||(7982214-7982283)
chr5 (29-93)||(7215291-7215354)
chr5 (29-105)||(14138550-14138626)
chr5 (334-394)||(17736713-17736773)
chr5 (204-280)||(37077760-37077836)
chr5 (34-110)||(37077760-37077836)
chr5 (164-260)||(39808191-39808287)
[»] chr6 (16 HSPs)
chr6 (130-282)||(32047172-32047325)
chr6 (127-356)||(32342523-32342753)
chr6 (37-112)||(32047172-32047247)
chr6 (34-186)||(32342523-32342676)
chr6 (297-394)||(32047046-32047144)
chr6 (127-224)||(32047046-32047144)
chr6 (127-394)||(20067972-20068239)
chr6 (300-393)||(32047231-32047325)
chr6 (35-275)||(20067921-20068160)
chr6 (297-393)||(32342657-32342753)
chr6 (131-260)||(7556040-7556171)
chr6 (77-188)||(26236689-26236799)
chr6 (247-358)||(26236689-26236799)
chr6 (35-90)||(7556116-7556171)
chr6 (207-264)||(23577167-23577224)
chr6 (37-94)||(23577167-23577224)
[»] chr7 (25 HSPs)
chr7 (74-262)||(27651379-27651566)
chr7 (125-320)||(23944037-23944231)
chr7 (173-341)||(32138854-32139024)
chr7 (31-260)||(34891385-34891612)
chr7 (244-395)||(27651379-27651530)
chr7 (29-171)||(32138880-32139024)
chr7 (295-393)||(23944133-23944231)
chr7 (29-150)||(23944037-23944157)
chr7 (128-223)||(31152823-31152919)
chr7 (298-393)||(31152823-31152919)
chr7 (29-92)||(27651504-27651566)
chr7 (143-359)||(22593510-22593725)
chr7 (128-223)||(31171384-31171480)
chr7 (298-393)||(31171384-31171480)
chr7 (37-87)||(8354394-8354444)
chr7 (207-257)||(8354394-8354444)
chr7 (127-270)||(32962311-32962456)
chr7 (127-263)||(44754928-44755065)
chr7 (154-281)||(42012800-42012926)
chr7 (35-88)||(3191567-3191620)
chr7 (205-258)||(3191567-3191620)
chr7 (58-111)||(8900673-8900726)
chr7 (228-281)||(8900673-8900726)
chr7 (297-356)||(32962311-32962372)
chr7 (29-93)||(44754928-44754992)
[»] chr1 (35 HSPs)
chr1 (29-239)||(67967-68178)
chr1 (169-395)||(67981-68208)
chr1 (121-264)||(49897886-49898030)
chr1 (127-273)||(5500739-5500885)
chr1 (127-259)||(38839582-38839715)
chr1 (291-395)||(49897925-49898030)
chr1 (154-275)||(52432666-52432786)
chr1 (29-105)||(52432666-52432742)
chr1 (136-234)||(3232174-3232273)
chr1 (29-259)||(34601435-34601663)
chr1 (154-256)||(3367806-3367908)
chr1 (306-394)||(3232184-3232273)
chr1 (131-390)||(34601366-34601625)
chr1 (27-112)||(46080969-46081054)
chr1 (137-220)||(41148568-41148651)
chr1 (307-390)||(41148568-41148651)
chr1 (203-282)||(46080969-46081048)
chr1 (29-259)||(3231979-3232209)
chr1 (158-234)||(7104311-7104387)
chr1 (165-281)||(44330462-44330578)
chr1 (297-390)||(5500739-5500833)
chr1 (324-393)||(3367839-3367908)
chr1 (328-395)||(7104320-7104387)
chr1 (29-103)||(5500812-5500885)
chr1 (35-89)||(38839661-38839715)
chr1 (29-86)||(3367806-3367863)
chr1 (212-281)||(10775162-10775231)
chr1 (42-111)||(10775162-10775231)
chr1 (29-94)||(49897886-49897951)
chr1 (172-275)||(10775022-10775125)
chr1 (165-232)||(15321089-15321156)
chr1 (164-281)||(24874597-24874715)
chr1 (297-394)||(38839582-38839680)
chr1 (29-111)||(44330462-44330544)
chr1 (29-89)||(7749024-7749084)
[»] chr8 (26 HSPs)
chr8 (163-394)||(32166593-32166820)
chr8 (127-287)||(29969091-29969252)
chr8 (29-224)||(32166629-32166820)
chr8 (175-371)||(35574610-35574805)
chr8 (29-264)||(35574634-35574868)
chr8 (121-259)||(7405477-7405612)
chr8 (297-395)||(29969152-29969252)
chr8 (172-234)||(29093582-29093644)
chr8 (175-264)||(37010315-37010404)
chr8 (29-112)||(12736052-12736135)
chr8 (342-395)||(29093591-29093644)
chr8 (190-270)||(6630524-6630604)
chr8 (291-391)||(7405477-7405574)
chr8 (198-282)||(12736052-12736136)
chr8 (132-258)||(6630308-6630435)
chr8 (29-94)||(37010339-37010404)
chr8 (37-117)||(29969091-29969170)
chr8 (29-100)||(6630533-6630604)
chr8 (132-258)||(6803868-6803995)
chr8 (29-64)||(29093582-29093617)
chr8 (302-393)||(6630308-6630400)
chr8 (302-393)||(6803868-6803960)
chr8 (29-89)||(7405552-7405612)
chr8 (134-257)||(13149009-13149133)
chr8 (31-99)||(33897748-33897816)
chr8 (345-393)||(35574610-35574658)
[»] chr4 (13 HSPs)
chr4 (35-247)||(25062352-25062565)
chr4 (154-394)||(25062375-25062616)
chr4 (128-234)||(22050898-22051005)
chr4 (298-395)||(22050907-22051005)
chr4 (34-99)||(15131574-15131639)
chr4 (204-269)||(15131574-15131639)
chr4 (32-88)||(22050719-22050775)
chr4 (31-99)||(54000043-54000111)
chr4 (203-258)||(22050719-22050774)
chr4 (37-99)||(25234202-25234264)
chr4 (207-269)||(25234202-25234264)
chr4 (203-269)||(54000045-54000111)
chr4 (175-260)||(20512797-20512882)
[»] chr3 (20 HSPs)
chr3 (85-232)||(2562969-2563115)
chr3 (255-393)||(2562978-2563115)
chr3 (133-264)||(39341215-39341347)
chr3 (165-275)||(48646417-48646526)
chr3 (29-264)||(54437653-54437887)
chr3 (126-281)||(54437805-54437961)
chr3 (132-245)||(51260553-51260665)
chr3 (154-262)||(20519245-20519353)
chr3 (303-395)||(39341254-39341347)
chr3 (29-92)||(20519290-20519353)
chr3 (31-94)||(39341215-39341278)
chr3 (302-393)||(51260553-51260643)
chr3 (296-356)||(54437900-54437961)
chr3 (127-226)||(7938121-7938220)
chr3 (171-259)||(13283806-13283894)
chr3 (29-105)||(48646417-48646492)
chr3 (297-395)||(7938122-7938220)
chr3 (37-201)||(42091793-42091955)
chr3 (207-371)||(42091793-42091955)
chr3 (155-259)||(45228277-45228378)
[»] scaffold0136 (2 HSPs)
scaffold0136 (140-266)||(36907-37035)
scaffold0136 (310-390)||(36907-36988)
[»] scaffold0564 (2 HSPs)
scaffold0564 (29-70)||(5293-5334)
scaffold0564 (204-240)||(5298-5334)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 29 - 281
Target Start/End: Complemental strand, 16576498 - 16576247
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  16576498 agatggagattgcatgttaaatgaaggatatgaagatgtttgttgtttttgaaatgaaaatgataaatgattgtaag-aaaaaactctatccgtggggcc 16576400  T
Q  129 tacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggata 228  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16576399 tacgttaccccttgatgaattgggttaatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 16576300  T
Q  229 tgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 281  Q
    |||||| ||||| ||||||||||| ||||||||||| ||||| |||| |||||    
T  16576299 tgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaa 16576247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 148 - 395
Target Start/End: Complemental strand, 16576549 - 16576303
Alignment:
Q  148 ttgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttct 247  Q
    ||||| ||||||| || |||||| || |||||||| ||  || ||||||  ||| ||||||  |||||| |||||||||||||||||||||||||||| |    
T  16576549 ttggggtaatttatctttaatgacaaatatgattcaataatgtaacgaagaagatggagattgcatgttaaatgaaggatatgaagatgtttgttgtttt 16576450  T
Q  248 tgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaatttacctctaatgataagtat 347  Q
    ||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  16576449 tgaaatgaaaatgataaatgattgtaag-aaaaaactctatccgtggggcctacgttaccccttgatgaattgggttaatttacccctaatgataagtat 16576351  T
Q  348 gattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16576350 gattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 16576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 38576810 - 38577006
Alignment:
Q  77 ttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaatttacctctaatgataagta 176  Q
    |||||||||||||||||| ||||| |||| ||||| || ||||  || ||||||||||||||||| |||||||||| ||||||||  ||||||| || ||    
T  38576810 ttgagatgaaaatggtaactgattgtaagaaaaaacct-tatcgatgaggcctacattacccctttatgaattggggtaatttactcctaatgacaaata 38576908  T
Q  177 tgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataa 274  Q
    ||||| |||| ||| ||||| |||| ||| ||||||||||||||||| || |||||||  |||  ||||||| ||||||||||||||| |||||||||    
T  38576909 tgatttgattatggtacgaaagagatggaaatcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgattataa 38577006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 393
Target Start/End: Original strand, 38576726 - 38576955
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    ||||||||||| ||||| ||||||||||||||| ||||| ||| || | ||||| |||||||||||||||| |         ||||| |  | |||||||    
T  38576726 taatttacctcaaatgacaagtatgattcgattttggaatgaaggatatggagaacacatgttgaatgaagaa---------gtttgattatattgagat 38576816  T
Q  254 gaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcg 353  Q
    ||||||||||| ||||| |||| ||||| || ||||  || ||||||||||||||||| |||||||||| ||||||||  ||||||| || ||||||| |    
T  38576817 gaaaatggtaactgattgtaagaaaaaacct-tatcgatgaggcctacattacccctttatgaattggggtaatttactcctaatgacaaatatgatttg 38576915  T
Q  354 attctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    ||| ||| ||||| |||| ||| |||||||||||||||||    
T  38576916 attatggtacgaaagagatggaaatcacatgttgaatgaa 38576955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 154 - 356
Target Start/End: Original strand, 9050074 - 9050276
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    |||||||||  |||||| ||| ||||||||||| || ||||||||||| |||||||| ||||||||||| ||| ||||||| ||||||||||||| | ||    
T  9050074 taatttacccttaatgacaagcatgattcgattttgtaacgaatgagatggagatcatatgttgaatgatggagatgaagaagtttgttgttcttcatat 9050173  T
Q  254 gaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattc 352  Q
    ||||||||||| ||||  ||| ||||||| | |||    | | || |||||| | |||||||||||| || |||||||||||||||||  |||| |||||    
T  9050174 gaaaatggtaactgatcgtaa-gaaaaaattatattgacgagaccaacattatctcttgatgaattgagggtaatttacctctaatgactagtaggattc 9050272  T
Q  353 gatt 356  Q
    ||||    
T  9050273 gatt 9050276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 275
Target Start/End: Complemental strand, 35370552 - 35370403
Alignment:
Q  126 gcctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    ||||||||||||| ||||||||||| || |||||| |  ||||||| ||||||| |||||| ||||||  ||||||| ||  || |||||||||||||||    
T  35370552 gcctacattacccgttgatgaattgagggtaatttgctcctaatgacaagtatgtttcgat-ctggaataaatgagatgggtattacatgttgaatgaag 35370454  T
Q  225 gatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 275  Q
    || | ||||| ||||| | |||||||||| |||||||||| ||||| ||||    
T  35370453 gagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaag 35370403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 9050119 - 9050351
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||||| ||||||||||| ||| ||||||| ||||||||||||| | ||||||||||||| ||||  ||| ||||||| | |||    | | ||    
T  9050119 agatggagatcatatgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaactgatcgtaa-gaaaaaattatattgacgagacc 9050217  T
Q  129 tacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggat 227  Q
     |||||| | |||||||||||| || |||||||||||||||||  |||| ||||||||| || ||| ||  ||| | | |||| ||||| |||||| ||     
T  9050218 aacattatctcttgatgaattgagggtaatttacctctaatgactagtaggattcgattatgaaacaaagaagatgtaaatcaaatgttaaatgaaagag 9050317  T
Q  228 atgaagatgtttgttgttcttgagatgaaaatgg 261  Q
    ||||| ||| ||| | || || ||||||||||||    
T  9050318 atgaaaatgcttgatatttttaagatgaaaatgg 9050351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 16863570 - 16863461
Alignment:
Q  166 aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaa 265  Q
    ||||| ||||| |||||||||||  |||||| |||| | ||||||||| |||||| ||| | |||||||  |||| |||||||||||||||||||||||     
T  16863570 aatgacaagtaggattcgattctataacgaaggagatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaac 16863471  T
Q  266 tgattataag 275  Q
    ||||| ||||    
T  16863470 tgattgtaag 16863461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 28282776 - 28282667
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    ||||||||| ||||| | |||||  ||| |||| |||||||||||||| ||||||||||| |||||||||| | || |||| ||||| |||| | |||||    
T  28282776 taatttacccctaataacaagtaaaatttgattatggaacgaatgagatggagatcacatattgaatgaagcagataaagaagtttgatgttatggagat 28282677  T
Q  254 gaaaatggta 263  Q
    ||||||||||    
T  28282676 gaaaatggta 28282667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 38576931 - 38577006
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataa 104  Q
    ||||||| ||||||||||||||||| || |||||||  |||  ||||||| ||||||||||||||| |||||||||    
T  38576931 agatggaaatcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgattataa 38577006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 17606589 - 17606655
Alignment:
Q  166 aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaa 232  Q
    ||||| ||||| |||| |||||| |||||||||||| ||| |||||||||||||||||||| |||||    
T  17606589 aatgacaagtaggatttgattcttgaacgaatgagatggatatcacatgttgaatgaaggagatgaa 17606655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 38576726 - 38576796
Alignment:
Q  324 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||||||| ||||| ||||||||||||||| ||||| ||| || | ||||| ||||||||||||||||    
T  38576726 taatttacctcaaatgacaagtatgattcgattttggaatgaaggatatggagaacacatgttgaatgaag 38576796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 9050074 - 9050142
Alignment:
Q  324 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatga 392  Q
    |||||||||  |||||| ||| ||||||||||| || ||||||||||| |||||||| |||||||||||    
T  9050074 taatttacccttaatgacaagcatgattcgattttgtaacgaatgagatggagatcatatgttgaatga 9050142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 16863537 - 16863461
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||| ||||||||| |||||| ||| | |||||||  |||| ||||||||||||||||||||||| ||||| ||||    
T  16863537 agatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaag 16863461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 17606589 - 17606648
Alignment:
Q  336 aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    ||||| ||||| |||| |||||| |||||||||||| ||| |||||||||||||||||||    
T  17606589 aatgacaagtaggatttgattcttgaacgaatgagatggatatcacatgttgaatgaagg 17606648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 275
Target Start/End: Complemental strand, 34176948 - 34176709
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataagga--aaaaactctatccgtggggcctacatt 134  Q
    |||||||||||||||||| | ||| | | |||||  |||||||||||||||||||||| | ||| ||||||  |||||  |||||  ||  ||||| |||    
T  34176948 atcacatgttgaatgaagaagatgtacaagtttg--gttcttgagatgaaaatggtaactaattgtaaggagaaaaaatcctatcaatgatgcctagatt 34176851  T
Q  135 accccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaag 233  Q
      ||  ||||||||||||  ||||| |   ||||||| || |||||||||||| || |||||| |||| | |||||| ||||| ||||||||| ||||||    
T  34176850 ttccaatgatgaattggggataattcaatcctaatgaaaaatatgattcgattatgaaacgaaagagatgaagatcatatgttaaatgaaggagatgaag 34176751  T
Q  234 atgtttgttgttcttgagatgaaaatggtaaatgattataag 275  Q
    |  |||| ||||| | || ||| ||| |||| ||||| ||||    
T  34176750 aattttgatgttcctaaggtgataatagtaactgattgtaag 34176709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 35371192 - 35371121
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatt 100  Q
    ||||||| |||||||||| ||||||||  |  |||| ||||| ||||||||| |||||||||||||||||||    
T  35371192 agatggaaatcacatgttaaatgaaggtaacaaagaagtttgatgttcttgatatgaaaatggtaaatgatt 35371121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 28282776 - 28282706
Alignment:
Q  324 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||||| ||||| | |||||  ||| |||| |||||||||||||| ||||||||||| ||||||||||    
T  28282776 taatttacccctaataacaagtaaaatttgattatggaacgaatgagatggagatcacatattgaatgaag 28282706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 35370468 - 35370403
Alignment:
Q  40 acatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||||||||||||||| | ||||| ||||| | |||||||||| |||||||||| ||||| ||||    
T  35370468 acatgttgaatgaaggagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaag 35370403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 320
Target Start/End: Complemental strand, 35373781 - 35373664
Alignment:
Q  206 gatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat----ggtaaatgattataaggaaaaaactctatccgtggggcctac 301  Q
    ||||||||||||||||||||  | ||||| |||||  |||||||||||||||||    ||||| ||||| |||  |||||||| |||| |||  ||||||    
T  35373781 gatcacatgttgaatgaaggtaaagaagaagtttgacgttcttgagatgaaaataaatggtaattgattgtaaa-aaaaaactttatcggtgacgcctac 35373683  T
Q  302 attaccccttgatgaattg 320  Q
    ||||| |||| ||||||||    
T  35373682 attactccttaatgaattg 35373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 35373781 - 35373664
Alignment:
Q  36 gatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat----ggtaaatgattataaggaaaaaactctatccgtggggcctac 131  Q
    ||||||||||||||||||||  | ||||| |||||  |||||||||||||||||    ||||| ||||| |||  |||||||| |||| |||  ||||||    
T  35373781 gatcacatgttgaatgaaggtaaagaagaagtttgacgttcttgagatgaaaataaatggtaattgattgtaaa-aaaaaactttatcggtgacgcctac 35373683  T
Q  132 attaccccttgatgaattg 150  Q
    ||||| |||| ||||||||    
T  35373682 attactccttaatgaattg 35373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 28282731 - 28282667
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 93  Q
    ||||||||||||||| |||||||||| | || |||| ||||| |||| | |||||||||||||||    
T  28282731 agatggagatcacatattgaatgaagcagataaagaagtttgatgttatggagatgaaaatggta 28282667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 35370552 - 35370453
Alignment:
Q  296 gcctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||||||||| ||||||||||| || |||||| |  ||||||| ||||||| ||||| |||||||  ||||||| ||  || |||||||||||||||    
T  35370552 gcctacattacccgttgatgaattgagggtaatttgctcctaatgacaagtatgtttcga-tctggaataaatgagatgggtattacatgttgaatgaag 35370454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 35371193 - 35371121
Alignment:
Q  198 gagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatt 270  Q
    |||| ||| |||||||||| ||||||||  |  |||| ||||| ||||||||| |||||||||||||||||||    
T  35371193 gagatggaaatcacatgttaaatgaaggtaacaaagaagtttgatgttcttgatatgaaaatggtaaatgatt 35371121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 395
Target Start/End: Complemental strand, 34176948 - 34176759
Alignment:
Q  207 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag--gaaaaaactctatccgtggggcctacatt 304  Q
    |||||||||||||||||| | ||| | | |||||  |||||||||||||||||||||| | ||| ||||  |||||||  |||||  ||  ||||| |||    
T  34176948 atcacatgttgaatgaagaagatgtacaagtttg--gttcttgagatgaaaatggtaactaattgtaaggagaaaaaatcctatcaatgatgcctagatt 34176851  T
Q  305 accccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
      ||  ||||||||| ||| ||||| |   ||||||| || |||||||||||| || |||||| |||| | |||||| ||||| ||||||||    
T  34176850 ttccaatgatgaattggggataattcaatcctaatgaaaaatatgattcgattatgaaacgaaagagatgaagatcatatgttaaatgaagg 34176759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 2248931 - 2248995
Alignment:
Q  30 gatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||||||| |||||||| ||| ||| | ||||||| ||||  |||| ||||||||||||||||||    
T  2248931 gatggagaccacatgttcaattaagaagatgaagaagtttaatgtttttgagatgaaaatggtaa 2248995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 25606506 - 25606386
Alignment:
Q  141 tgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgttt 239  Q
    |||||||||| || |||||||||  |||| | ||||| |||||| || ||||||||| |||| | | |||| ||||||||||||  | |||||||  |||    
T  25606506 tgatgaattgagggtaatttacccttaataacaagtaggattcgtttatggaacgaaggagatgtatatcatatgttgaatgaaacagatgaagaatttt 25606407  T
Q  240 gttgttcttgagatgaaaatg 260  Q
    | |||||| ||| ||||||||    
T  25606406 gatgttctggagttgaaaatg 25606386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 137 - 309
Target Start/End: Original strand, 2243248 - 2243425
Alignment:
Q  137 cccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatg 236  Q
    |||||||||||||||| ||||||||||||||||| |||||  |||||||||| |||||||  ||| |||||||||||||||||||||||||||||||| |    
T  2243248 cccttgatgaattggggtaatttacctctaatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaaggatatgaagaag 2243347  T
Q  237 tttgttgttcttgagatgaaaatggtaaatgattataag--gaaaa---aactctatccgtggggcctacattacccc 309  Q
    |||| ||||||||||||||||||||||| | ||| ||||  |||||   ||||||||  ||| |||||||||||||||    
T  2243348 tttgatgttcttgagatgaaaatggtaactaattgtaagaagaaaaaacaactctataggtgaggcctacattacccc 2243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 266
Target Start/End: Complemental strand, 40483931 - 40483696
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||||||||||||| | ||| | ||||||| ||| | ||||||||| || ||  ||| || ||||| || | ||||||| |||||  || ||||    
T  40483931 agatggagatcacatgttgagtaaagaagatgaagaagttggatgttcttgatataaatttgggaattgattgtacg-aaaaaac-ctatcgatgaggcc 40483834  T
Q  129 tacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggat 227  Q
    ||  ||| | |||||||||||| || ||| ||||| | ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||  ||     
T  40483833 tatgttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatgagtgag 40483734  T
Q  228 atgaagatgtttgttgttcttgagatgaaaatggtaaat 266  Q
    ||||||| ||||| |||| || |||||||||| ||||||    
T  40483733 atgaagaagtttgatgtt-tttagatgaaaatagtaaat 40483696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 392
Target Start/End: Complemental strand, 40483940 - 40483739
Alignment:
Q  190 gaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatc 289  Q
    |||||||||||| |||||||||||||||| | ||| | ||||||| ||| | ||||||||| || ||  ||| || ||||| || | ||||||| |||||    
T  40483940 gaacgaatgagatggagatcacatgttgagtaaagaagatgaagaagttggatgttcttgatataaatttgggaattgattgtacg-aaaaaac-ctatc 40483843  T
Q  290 cgtggggcctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttga 388  Q
      || ||||||  ||| | |||||||||||| || ||| ||||| | ||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  40483842 gatgaggcctatgttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttga 40483743  T
Q  389 atga 392  Q
    ||||    
T  40483742 atga 40483739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 2243310 - 2243425
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag--gaaaa---aactctatccgtg 123  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||| ||||  |||||   ||||||||  |||    
T  2243310 agatggagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaagaaaaaacaactctataggtg 2243409  T
Q  124 gggcctacattacccc 139  Q
     |||||||||||||||    
T  2243410 aggcctacattacccc 2243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 262
Target Start/End: Original strand, 22780174 - 22780401
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacat 133  Q
    ||||||||||||||||||| | | ||||| | ||||| |||| |||| || |||||||||| ||||| |||  ||||||| ||| |  ||  || | |||    
T  22780174 gagatcacatgttgaatgacgtagatgaaaaagtttgatgttattgaaataaaaatggtaactgattgtaat-aaaaaac-ctaccaatgaagcatgcat 22780271  T
Q  134 taccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaa 232  Q
    |||||   |||||||||| | ||||||| | ||||||| || ||||||| ||||||  |||||| | || | ||||||||||||||||||||||||||||    
T  22780272 tacccaacgatgaattggaggtaatttatccctaatgacaactatgatttgattctaaaacgaaagggatgaagatcacatgttgaatgaaggatatgaa 22780371  T
Q  233 gatgtttgttgttcttgagatgaaaatggt 262  Q
    || |||| ||||| ||||||||||||||||    
T  22780372 gaagtttattgtttttgagatgaaaatggt 22780401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 395
Target Start/End: Original strand, 2243248 - 2243336
Alignment:
Q  307 cccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    |||||||||||||||| ||||||||||||||||| |||||  |||||||||| |||||||  ||| |||||||||||||||||||||||    
T  2243248 cccttgatgaattggggtaatttacctctaatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaagg 2243336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 17736713 - 17736856
Alignment:
Q  164 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 263  Q
    ||||||| ||||| ||||||||||| |||||||  |||  ||||||||||||||| ||||| | ||||||| ||||  | || |||||||||||||||||    
T  17736713 ctaatgacaagtacgattcgattctagaacgaagaagatagagatcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggta 17736812  T
Q  264 aatgattataaggaaaaaactctatccgtggggcctacattacc 307  Q
    | || || |||| |||||| |||||| ||| || ||| ||||||    
T  17736813 attggttgtaagaaaaaaattctatcagtgaggtctatattacc 17736856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 7215417 - 7215527
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    |||||||| |||||| | || |||||| || |||||||||||| |||| | |||||||||||||||||||| ||||||| | ||||  ||||||||| ||    
T  7215417 taatttacatctaataacaactatgatgcggttctggaacgaaagagatgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatat 7215516  T
Q  254 gaaaatggtaa 264  Q
    |||||| ||||    
T  7215517 gaaaatagtaa 7215527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 22780339 - 22780401
Alignment:
Q  30 gatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggt 92  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  22780339 gatgaagatcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatggt 22780401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 41264503 - 41264393
Alignment:
Q  151 ggttaatttacctctaatgataagtatgattcgattctgg-aacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttg 249  Q
    |||||||||||||||||| | || |||||||||||| ||  |||||| |||| | |||||||||||||||||||  ||||||| | ||||  ||||||||    
T  41264503 ggttaatttacctctaataacaattatgattcgattatgataacgaaagagatgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttg 41264404  T
Q  250 agatgaaaatg 260  Q
    |||||||||||    
T  41264403 agatgaaaatg 41264393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 17740018 - 17739907
Alignment:
Q  129 tacattaccccttgatgaattgggttaattt-acctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggat 227  Q
    |||||||||||||||||||||| || || || | | ||||| ||||||| ||||||||||||||||||| |||| | | |||||||||| ||||||| |     
T  17740018 tacattaccccttgatgaattgagtgaaattcatccctaataataagtaggattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaag 17739919  T
Q  228 atgaagatgttt 239  Q
    ||||||| ||||    
T  17739918 atgaagaagttt 17739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 394
Target Start/End: Original strand, 7215224 - 7215487
Alignment:
Q  133 ttaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatga 231  Q
    ||||| |||| |||||| ||| |||||||||  ||||||||| |||||||| ||| | ||| |||  ||| ||||||||||| || ||||||| | |  |    
T  7215224 ttacctcttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaatgaaaaagatggagatcacatattcaatgaagaagaa-a 7215322  T
Q  232 agatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccc---cttgatgaattg-ggttaat 327  Q
    ||| ||||| ||||||||||||||||||||||  ||||| ||| |||||||| | | | ||| | | | ||||||||     |||||||||| |  ||||    
T  7215323 agaagtttgatgttcttgagatgaaaatggtagttgattgtaa-gaaaaaac-ccagcagtgagtcatgcattacccaataatgatgaattgagaataat 7215420  T
Q  328 ttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    |||| |||||| | || |||||| || |||||||||||| |||| | ||||||||||||||||||||    
T  7215421 ttacatctaataacaactatgatgcggttctggaacgaaagagatgaagatcacatgttgaatgaag 7215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 394
Target Start/End: Complemental strand, 17740018 - 17739922
Alignment:
Q  299 tacattaccccttgatgaattgggttaattt-acctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    |||||||||||||||||||||| || || || | | ||||| ||||||| ||||||||||||||||||| |||| | | |||||||||| |||||||    
T  17740018 tacattaccccttgatgaattgagtgaaattcatccctaataataagtaggattcgattctggaacgaaggagatgaaaatcacatgttaaatgaag 17739922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 973236 - 973110
Alignment:
Q  155 aatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatg 254  Q
    ||||||| | ||||||||| |||||||| ||| || || |||||||| | |||||||||||||||| ||||| |||||||  |||  |||| |||||||     
T  973236 aatttacttttaatgataaatatgattcaattttgtaatgaatgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagata 973137  T
Q  255 aaaatggtaaatgattataaggaaaaa 281  Q
    |||||| ||| | ||| |||| |||||    
T  973136 aaaatgataactaattgtaagaaaaaa 973110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 17736748 - 17736856
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||| ||||||||||||||| ||||| | ||||||| ||||  | || |||||||||||||||||| || || |||| |||||| |||||| ||| || |    
T  17736748 agatagagatcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggtaattggttgtaagaaaaaaattctatcagtgaggtc 17736847  T
Q  129 tacattacc 137  Q
    || ||||||    
T  17736848 tatattacc 17736856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 17736852 - 17736918
Alignment:
Q  158 ttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||||| | || |||||||| ||||    
T  17736852 ttacctctaatgacaagtatgattctattgtagaacgaatgagaaggaaaccatatgttgaaggaag 17736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 17736852 - 17736918
Alignment:
Q  328 ttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||||| | || |||||||| ||||    
T  17736852 ttacctctaatgacaagtatgattctattgtagaacgaatgagaaggaaaccatatgttgaaggaag 17736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 41264653 - 41264539
Alignment:
Q  156 atttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatga 255  Q
    |||||||||||||||||| |||||||||||| | |||| ||  | | ||| ||| || ||| |||||| || |||||||  |||| ||||||||| ||||    
T  41264653 atttacctctaatgataaatatgattcgattttagaacaaaaaatatggaaatctcaagttaaatgaaagagatgaagaaatttgatgttcttgatatga 41264554  T
Q  256 aaatggtaaatgatt 270  Q
    |||| |||| |||||    
T  41264553 aaattgtaactgatt 41264539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 7215462 - 7215527
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    ||||| |||||||||||||||||||| ||||||| | ||||  ||||||||| |||||||| ||||    
T  7215462 agatgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatatgaaaatagtaa 7215527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 41264454 - 41264393
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatg 90  Q
    ||||| |||||||||||||||||||  ||||||| | ||||  |||||||||||||||||||    
T  41264454 agatgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttgagatgaaaatg 41264393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 41264503 - 41264430
Alignment:
Q  321 ggttaatttacctctaatgataagtatgattcgattctg-gaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||||||||||||||| | || |||||||||||| ||  |||||| |||| | |||||||||||||||||||    
T  41264503 ggttaatttacctctaataacaattatgattcgattatgataacgaaagagatgaagatcacatgttgaatgaa 41264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 2822597 - 2822681
Alignment:
Q  179 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 263  Q
    ||||||||||| || |||||||| |||||||||| ||| || |||||| |||||||  |||  |||| |||| ||||||||||||    
T  2822597 attcgattctgaaatgaatgagatggagatcacacgttaaaggaaggagatgaagaaatttaatgtttttgaaatgaaaatggta 2822681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 395
Target Start/End: Original strand, 22780174 - 22780364
Alignment:
Q  204 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacat 303  Q
    ||||||||||||||||||| | | ||||| | ||||| |||| |||| || |||||||||| ||||| |||  ||||||| ||| |  ||  || | |||    
T  22780174 gagatcacatgttgaatgacgtagatgaaaaagtttgatgttattgaaataaaaatggtaactgattgtaat-aaaaaac-ctaccaatgaagcatgcat 22780271  T
Q  304 taccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    |||||   |||||||||| | ||||||| | ||||||| || ||||||| ||||||  |||||| | || | |||||||||||||||||||||    
T  22780272 tacccaacgatgaattggaggtaatttatccctaatgacaactatgatttgattctaaaacgaaagggatgaagatcacatgttgaatgaagg 22780364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 973236 - 973166
Alignment:
Q  325 aatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    ||||||| | ||||||||| |||||||| ||| || || |||||||| | |||||||||||||||| ||||    
T  973236 aatttacttttaatgataaatatgattcaattttgtaatgaatgagatgaagatcacatgttgaataaagg 973166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 7982214 - 7982283
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaaga 234  Q
    ||||||||| ||| |||| |||||| || ||| ||||  || |||||||||||||||||||| |||||||    
T  7982214 taatgataaatattattcaattctgaaatgaaggagatagaaatcacatgttgaatgaaggagatgaaga 7982283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 7215291 - 7215354
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 93  Q
    ||||||||||||||| || ||||||| | |  |||| ||||| ||||||||||||||||||||||    
T  7215291 agatggagatcacatattcaatgaagaagaa-aagaagtttgatgttcttgagatgaaaatggta 7215354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 14138626 - 14138550
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||| |||| |||||||||||||| || ||||  | ||||| | ||||| ||||||||||||||| ||||| ||||    
T  14138626 agatgaagattacatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaattgattgtaag 14138550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 17736713 - 17736773
Alignment:
Q  334 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||| ||||| ||||||||||| |||||||  |||  ||||||||||||||| |||||    
T  17736713 ctaatgacaagtacgattcgattctagaacgaagaagatagagatcacatgttgagtgaag 17736773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 37077836 - 37077760
Alignment:
Q  204 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaa 280  Q
    ||||||||||||||||||||  | || ||||  |||| |||| |||||||||||||| ||| ||||| |||| ||||    
T  37077836 gagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 37077760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 37077836 - 37077760
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaa 110  Q
    ||||||||||||||||||||  | || ||||  |||| |||| |||||||||||||| ||| ||||| |||| ||||    
T  37077836 gagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 37077760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 39808191 - 39808287
Alignment:
Q  164 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatg 260  Q
    ||||||| |||| |||||||||||| ||| ||| ||||   |||||| ||||| ||||||||| ||||| | ||||| || |||| || ||||||||    
T  39808191 ctaatgacaagtgtgattcgattctagaatgaaagagacatagatcatatgttaaatgaaggagatgaaaaagtttgatggtcttaaggtgaaaatg 39808287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 32047325 - 32047172
Alignment:
Q  130 acattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggata 228  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||| ||||| |||  ||| | | |||| |||||||||||| || |    
T  32047325 acattatcccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgaga 32047226  T
Q  229 tgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 282  Q
    |||||| ||||| ||||||||||||||||||||||||||| | || ||||||||    
T  32047225 tgaagaagtttgatgttcttgagatgaaaatggtaaatgaatgtacggaaaaaa 32047172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 356
Target Start/End: Complemental strand, 32342753 - 32342523
Alignment:
Q  127 cctacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 226  Q
    |||||||| ||| || |||||||||| ||||||| |  ||||||||| ||||||| ||||||||||||||  | |  |||||| ||||||||||||| ||    
T  32342753 cctacattgcccttttatgaattggggtaatttatccttaatgataaatatgatttgattctggaacgaaaaaaatagagatcgcatgttgaatgaatga 32342654  T
Q  227 tatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatga--attgggtt 324  Q
     ||||| | ||||| |||| |||||||||||||| ||| ||||| ||| |||||||||  |   ||| ||||||||| | ||||||||||  |||||| |    
T  32342653 gatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaa-gaaaaaactaaaatggtgaggcctacatcatcccttgatgaacattggggt 32342555  T
Q  325 aatttacctctaatgataagtatgattcgatt 356  Q
    |||||| | ||||||| || ||||||||||||    
T  32342554 aatttatcgctaatgacaaatatgattcgatt 32342523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 32047247 - 32047172
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 112  Q
    |||| |||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||| | || ||||||||    
T  32047247 atcatatgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaatggtaaatgaatgtacggaaaaaa 32047172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 32342676 - 32342523
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacat 133  Q
    |||||| ||||||||||||| || ||||| | ||||| |||| |||||||||||||| ||| ||||| ||| |||||||||  |   ||| |||||||||    
T  32342676 gagatcgcatgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaa-gaaaaaactaaaatggtgaggcctacat 32342578  T
Q  134 taccccttgatga--attgggttaatttacctctaatgataagtatgattcgatt 186  Q
     | ||||||||||  |||||| ||||||| | ||||||| || ||||||||||||    
T  32342577 catcccttgatgaacattggggtaatttatcgctaatgacaaatatgattcgatt 32342523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 394
Target Start/End: Complemental strand, 32047144 - 32047046
Alignment:
Q  297 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||||||| ||||||||||||  | |||||||| |||| ||| || || ||||| |||||||||||||  | ||||||||||||||||||||||||    
T  32047144 cctacattacctcttgatgaattgatggtaatttacttctattgacaaataggattcaattctggaacgaagaaaaaggagatcacatgttgaatgaag 32047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 32047144 - 32047046
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    ||||||||||| ||||||||||||  | |||||||| |||| ||| || || ||||| |||||||||||||  | ||||||||||||||||||||||||    
T  32047144 cctacattacctcttgatgaattgatggtaatttacttctattgacaaataggattcaattctggaacgaagaaaaaggagatcacatgttgaatgaag 32047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 394
Target Start/End: Complemental strand, 20068239 - 20067972
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||||| || |||||||||| | || ||||||| |||||||||||| ||||  |||||| |  |||  |||   |||| |||||||||||||| |    
T  20068239 cctacattacctctcgatgaattggtgatattttacctttaatgataagtaagattttattctgaactgaagaagataaagatgacatgttgaatgaaag 20068140  T
Q  226 atatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgg-gtt 324  Q
    | |||| || ||||| ||||||  | ||||||||||||  ||||| |||| ||||| | ||||   || ||| ||||||  || |||||||||||  | |    
T  20068139 agatgaggaagtttgatgttctctacatgaaaatggtac-tgattgtaag-aaaaagcactatggatgaggcttacattttcctttgatgaattgaaggt 20068042  T
Q  325 aatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||||  ||| || ||||| ||||||||| |||||||||||||  | ||||||||||||||| ||||    
T  20068041 aatttacccttaaagacaagtaggattcgattatggaacgaatgaggggaagatcacatgttgaaggaag 20067972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 32047325 - 32047231
Alignment:
Q  300 acattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||| ||||| |||  ||| | | |||| ||||||||||||    
T  32047325 acattatcccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaa 32047231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 275
Target Start/End: Complemental strand, 20068160 - 20067921
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacatt 134  Q
    |||| |||||||||||||| || |||| || ||||| ||||||  | ||||||||||||  ||||| |||| ||||| | ||||   || ||| ||||||    
T  20068160 agatgacatgttgaatgaaagagatgaggaagtttgatgttctctacatgaaaatggtac-tgattgtaag-aaaaagcactatggatgaggcttacatt 20068063  T
Q  135 accccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaag 233  Q
      || |||||||||||  | |||||||||  ||| || ||||| ||||||||| |||||||||||||  | ||||||||||||||| ||||   | ||||    
T  20068062 ttcctttgatgaattgaaggtaatttacccttaaagacaagtaggattcgattatggaacgaatgaggggaagatcacatgttgaaggaagatgaagaag 20067963  T
Q  234 atgtttgttgttcttgagatgaaaatggtaaatgattataag 275  Q
    | || |  |||| |||||||||||||| ||| ||||| ||||    
T  20067962 aagtataatgttattgagatgaaaatgataactgattctaag 20067921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 393
Target Start/End: Complemental strand, 32342753 - 32342657
Alignment:
Q  297 cctacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||||| ||| || |||||||||| ||||||| |  ||||||||| ||||||| ||||||||||||||  | |  |||||| |||||||||||||    
T  32342753 cctacattgcccttttatgaattggggtaatttatccttaatgataaatatgatttgattctggaacgaaaaaaatagagatcgcatgttgaatgaa 32342657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 7556040 - 7556171
Alignment:
Q  131 cattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctgg-aacgaatgagaaggagatcacatgttgaatgaaggata 228  Q
    ||||| || ||||||||||| || ||||||| | ||||| | || |||||||||||| ||  |||||| || | | ||||||||||||||||||| ||||    
T  7556040 cattatccattgatgaattgagggtaatttatccctaataacaactatgattcgattatgataacgaaagataggaagatcacatgttgaatgaatgata 7556139  T
Q  229 tgaagatgtttgttgttcttgagatgaaaatg 260  Q
    |||| |  |||  |||||||||||||||||||    
T  7556140 tgaataaatttaatgttcttgagatgaaaatg 7556171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 26236689 - 26236799
Alignment:
Q  77 ttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggt-taatttacctctaatgataagt 175  Q
    |||||||||||||||||| | |||||||| |||||||| ||||  |  ||| | ||||| ||  |||| |||||||  ||||||||||||||| ||||||    
T  26236689 ttgagatgaaaatggtaactcattataag-aaaaaact-tatcaataaggcatgcattatccaatgataaattgggggtaatttacctctaataataagt 26236786  T
Q  176 atgattcgattct 188  Q
    |||||||||||||    
T  26236787 atgattcgattct 26236799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 358
Target Start/End: Original strand, 26236689 - 26236799
Alignment:
Q  247 ttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggt-taatttacctctaatgataagt 345  Q
    |||||||||||||||||| | |||||||| |||||||| ||||  |  ||| | ||||| ||  |||| |||||||  ||||||||||||||| ||||||    
T  26236689 ttgagatgaaaatggtaactcattataag-aaaaaact-tatcaataaggcatgcattatccaatgataaattgggggtaatttacctctaataataagt 26236786  T
Q  346 atgattcgattct 358  Q
    |||||||||||||    
T  26236787 atgattcgattct 26236799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 7556116 - 7556171
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatg 90  Q
    ||||||||||||||||||| |||||||| |  |||  |||||||||||||||||||    
T  7556116 agatcacatgttgaatgaatgatatgaataaatttaatgttcttgagatgaaaatg 7556171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 23577224 - 23577167
Alignment:
Q  207 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 264  Q
    |||| ||||||||||||||| ||| ||| || || |||| ||||||||||||||||||    
T  23577224 atcagatgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaa 23577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 23577224 - 23577167
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||| ||||||||||||||| ||| ||| || || |||| ||||||||||||||||||    
T  23577224 atcagatgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaa 23577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 74 - 262
Target Start/End: Original strand, 27651379 - 27651566
Alignment:
Q  74 ttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaa-tttacctctaatgata 172  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| ||||| ||| || ||||||||||  |||||||||||||   | |||||| || |||| |    
T  27651379 ttcttgagatgaaaatgataattgattgtaag-aaaaaaccctatcggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaa 27651477  T
Q  173 agtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggt 262  Q
    |||||||||| ||||| || || | |||| ||| |||||||||||||||||||| ||| || |||||| |||||||||||||||||||||    
T  27651478 agtatgattcaattctagaccggaggagatggatatcacatgttgaatgaaggagatg-agttgtttgatgttcttgagatgaaaatggt 27651566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 320
Target Start/End: Complemental strand, 23944231 - 23944037
Alignment:
Q  125 ggcctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 223  Q
    ||||||||||| ||||||||||||| ||| | ||| ||| || ||||||||||||||||||||||||||  || |||| ||| |||||||||||||||||    
T  23944231 ggcctacattatcccttgatgaatttgggatgatt-acccctgatgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaa 23944133  T
Q  224 ggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattg 320  Q
     || | ||||| ||||| ||||||| |||||||||||| || | ||| ||| |||||||||  |   ||| | ||||||||||||||||||||||||    
T  23944132 agagaagaagaagtttgatgttcttaagatgaaaatggcaactaattgtaa-gaaaaaacttaaatggtgagacctacattaccccttgatgaattg 23944037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 341
Target Start/End: Original strand, 32138854 - 32139024
Alignment:
Q  173 agtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattat 272  Q
    ||||||||||| |||| |||||||  ||| |||||| |||||||||| |||||| |||||||  |||| ||||||| ||||||||||||||| ||||| |    
T  32138854 agtatgattcgcttctagaacgaagaagatggagattacatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgatttt 32138953  T
Q  273 aag-gaaaaaactctatccgtggggcctacattaccccttgatgaattggg-ttaatttacctctaatgat 341  Q
    |||  |||||||   |  |||| | |||||||||||| ||||||||| |||  ||||||||| ||||||||    
T  32138954 aagaaaaaaaaccaaaatcgtgagacctacattaccctttgatgaatcgggagtaatttacccctaatgat 32139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 34891612 - 34891385
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggccta 130  Q
    |||||||||||||||||||||||||| |||||||  |||| |||||||||||| |||||| ||| | ||  ||| ||||||||  |||| || | |||||    
T  34891612 atggagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaa-gaaaaaaccatatcggt-gagccta 34891515  T
Q  131 cattaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatg 230  Q
     |||   |||||||||| |||| ||||||||| || |||| || ||  ||||||||  |||| ||| ||||   |||||||||||| ||||||| | ||     
T  34891514 tattcttccttgatgaactggggtaatttacccctcatgacaaatacaattcgatttgggaatgaaagagatctagatcacatgttaaatgaagaagata 34891415  T
Q  231 aagatgtttgttgttcttgagatgaaaatg 260  Q
    |||| ||||| ||||||| | |||||||||    
T  34891414 aagaagtttgatgttcttaatatgaaaatg 34891385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 27651379 - 27651530
Alignment:
Q  244 ttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaa-tttacctctaatgata 342  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| ||||| ||| || ||||||||||  |||||||||||||   | |||||| || |||| |    
T  27651379 ttcttgagatgaaaatgataattgattgtaag-aaaaaaccctatcggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaa 27651477  T
Q  343 agtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    |||||||||| ||||| || || | |||| ||| |||||||||||||||||||    
T  27651478 agtatgattcaattctagaccggaggagatggatatcacatgttgaatgaagg 27651530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 32138880 - 32139024
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag-gaaaaaactctatccgtggggc 127  Q
    |||||||||| |||||||||| |||||| |||||||  |||| ||||||| ||||||||||||||| ||||| ||||  |||||||   |  |||| | |    
T  32138880 agatggagattacatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaaaaaccaaaatcgtgagac 32138979  T
Q  128 ctacattaccccttgatgaattggg-ttaatttacctctaatgat 171  Q
    ||||||||||| ||||||||| |||  ||||||||| ||||||||    
T  32138980 ctacattaccctttgatgaatcgggagtaatttacccctaatgat 32139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 23944231 - 23944133
Alignment:
Q  295 ggcctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    ||||||||||| ||||||||||||| ||| | ||| ||| || ||||||||||||||||||||||||||  || |||| ||| |||||||||||||||||    
T  23944231 ggcctacattatcccttgatgaatttgggatgatt-acccctgatgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaa 23944133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 23944157 - 23944037
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||| ||||||||||||||||| || | ||||| ||||| ||||||| |||||||||||| || | ||| ||| |||||||||  |   ||| | ||    
T  23944157 agatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatggcaactaattgtaa-gaaaaaacttaaatggtgagacc 23944059  T
Q  129 tacattaccccttgatgaattg 150  Q
    ||||||||||||||||||||||    
T  23944058 tacattaccccttgatgaattg 23944037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 31152823 - 31152919
Alignment:
Q  128 ctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 223  Q
    |||||||| | ||||||||||||||  |||||||||| |||| | ||||| ||||||||| || |||||| |||| ||||||||||| |||||||||    
T  31152823 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 31152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 31152823 - 31152919
Alignment:
Q  298 ctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||||| | ||||||||||||||  |||||||||| |||| | ||||| ||||||||| || |||||| |||| ||||||||||| |||||||||    
T  31152823 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 31152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 27651504 - 27651566
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggt 92  Q
    ||||||| |||||||||||||||||||| ||| || |||||| |||||||||||||||||||||    
T  27651504 agatggatatcacatgttgaatgaaggagatg-agttgtttgatgttcttgagatgaaaatggt 27651566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 359
Target Start/End: Original strand, 22593510 - 22593725
Alignment:
Q  143 atgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgtt 242  Q
    ||||||||||  |||||| | ||||||| ||  | ||||||||| | ||||||| ||||  || |||||||||||||||||  | |||||   ||||| |    
T  22593510 atgaattggggcaatttatccctaatgacaaaaacgattcgattttagaacgaaggagatagatatcacatgttgaatgaaatagatgaa---gtttgat 22593606  T
Q  243 gttcttgagatgaaaatggtaaatgattat-aaggaaaaaactc-tatccgtggggcctacattaccccttgatgaattgg-gttaatttacctctaatg 339  Q
    ||||||||||||||||||  || ||||| | ||| |||||| || ||||  || | |||||||||||| || ||||||||| | ||||||||| ||||||    
T  22593607 gttcttgagatgaaaatgacaattgattgtaaagaaaaaaaatcttatcgatgagacctacattacccattaatgaattggaggtaatttacc-ctaatg 22593705  T
Q  340 ataagtatgattcgattctg 359  Q
    | || || ||||||||||||    
T  22593706 acaattacgattcgattctg 22593725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 31171384 - 31171480
Alignment:
Q  128 ctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 223  Q
    |||||||| | ||||||||||| ||| |||||||||| |||| | ||||| ||||||||| || |||||| |||| ||| ||||||| |||||||||    
T  31171384 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggaaatcacattttgaatgaa 31171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 31171384 - 31171480
Alignment:
Q  298 ctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||||| | ||||||||||| ||| |||||||||| |||| | ||||| ||||||||| || |||||| |||| ||| ||||||| |||||||||    
T  31171384 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggaaatcacattttgaatgaa 31171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 8354394 - 8354444
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaa 87  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||||||||    
T  8354394 atcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaa 8354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 8354394 - 8354444
Alignment:
Q  207 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaa 257  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||||||||    
T  8354394 atcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaa 8354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 32962311 - 32962456
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaattta-cctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    ||||||||||||||||||||||||| | |||||||  || ||||||||| |||||||||||| || ||| ||  | | | |||||| ||||||||| |||    
T  32962311 cctacattaccccttgatgaattggaggtaatttattctataatgataaatatgattcgattttgaaacaaaaaatatgtagatcatatgttgaataaag 32962410  T
Q  225 gatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatt 270  Q
    || ||||| | ||||| | ||||| | ||||| ||| ||| |||||    
T  32962411 gagatgaaaaagtttgattttcttaaaatgaatatgataattgatt 32962456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 44755065 - 44754928
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||| ||||||||||||| | |  |||||||| ||||| |||||    |||||||| |||| | || |||| | |||||||||||||||||||      
T  44755065 cctacattatcccttgatgaattcgaggcaatttacccctaataataagccgaattcgattatggatcaaaggagatgaagatcacatgttgaatgaaat 44754966  T
Q  226 atatgaagatgtttgttgttcttgagatgaaaatggta 263  Q
    | | ||||| ||||| |||||| || ||||||||||||    
T  44754965 aaaggaagaagtttgatgttctagaaatgaaaatggta 44754928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 42012926 - 42012800
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    |||||||| ||||||||||| || ||||  ||||| |||||||  | | |||||||||||||||||| ||  | ||||| | ||||| |||||||| |||    
T  42012926 taatttacttctaatgataaataagatttaattcttgaacgaagtaaatggagatcacatgttgaat-aaatagatgaaaaagtttgatgttcttgtgat 42012828  T
Q  254 gaaaatggtaaatgattataaggaaaaa 281  Q
     ||| |||||| ||||| |||| |||||    
T  42012827 aaaagtggtaactgattctaagaaaaaa 42012800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 3191567 - 3191620
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaa 88  Q
    |||||||||||||||| ||||| |||||||  |||| |||| ||||||||||||    
T  3191567 agatcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaa 3191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 3191567 - 3191620
Alignment:
Q  205 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaa 258  Q
    |||||||||||||||| ||||| |||||||  |||| |||| ||||||||||||    
T  3191567 agatcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaa 3191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 8900673 - 8900726
Alignment:
Q  58 atgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 111  Q
    ||||||| |||||||||||||||||| |||||||||| | ||| |||| |||||    
T  8900673 atgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaa 8900726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 8900673 - 8900726
Alignment:
Q  228 atgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 281  Q
    ||||||| |||||||||||||||||| |||||||||| | ||| |||| |||||    
T  8900673 atgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaa 8900726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 32962311 - 32962372
Alignment:
Q  297 cctacattaccccttgatgaattgg-gttaattta-cctctaatgataagtatgattcgatt 356  Q
    ||||||||||||||||||||||||| | |||||||  || ||||||||| ||||||||||||    
T  32962311 cctacattaccccttgatgaattggaggtaatttattctataatgataaatatgattcgatt 32962372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 44754992 - 44754928
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 93  Q
    ||||| |||||||||||||||||||  | | ||||| ||||| |||||| || ||||||||||||    
T  44754992 agatgaagatcacatgttgaatgaaataaaggaagaagtttgatgttctagaaatgaaaatggta 44754928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 68178 - 67967
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||||||||||| ||||||||| ||||||| ||| | ||||||||| || |||||||||| | ||| |||| ||||||| |||||  || ||||    
T  68178 agatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaag-aaaaaac-ctatcaatgaggcc 68081  T
Q  129 tacattaccccttgatga---attgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    | |||||||   ||||||   | || | ||||||||||||||||| || |||||| ||||| ||||| ||| |||| | ||||||||||| |||||||||    
T  68080 tgcattacctaatgatgatgaaatgtggtaatttacctctaatgacaattatgatccgattttggaatgaaagagatgaagatcacatgtagaatgaagg 67981  T
Q  226 atatgaagatgttt 239  Q
    ||||||||| ||||    
T  67980 atatgaagaagttt 67967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 395
Target Start/End: Complemental strand, 68208 - 67981
Alignment:
Q  169 gataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatga 268  Q
    ||||| ||| |||||||| |||||||||  ||| |||||||||||||| ||||||||| ||||||| ||| | ||||||||| || |||||||||| | |    
T  68208 gataaatatcattcgattttggaacgaaaaagatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactca 68109  T
Q  269 ttataaggaaaaaactctatccgtggggcctacattacc---ccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacga 365  Q
    || ||| |||||||| |||||  || ||||| |||||||      ||||||| || | ||||||||||||||||| || |||||| ||||| ||||| ||    
T  68108 ttgtaa-gaaaaaac-ctatcaatgaggcctgcattacctaatgatgatgaaatgtggtaatttacctctaatgacaattatgatccgattttggaatga 68011  T
Q  366 atgagaaggagatcacatgttgaatgaagg 395  Q
    | |||| | ||||||||||| |||||||||    
T  68010 aagagatgaagatcacatgtagaatgaagg 67981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 264
Target Start/End: Complemental strand, 49898030 - 49897886
Alignment:
Q  121 gtggggcctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaa 219  Q
    ||||||| |||||||||| ||| |||||  | | ||||||||||||||||| || |||||||||||||| |||| || |||| |||||||||||||||||    
T  49898030 gtggggcgtacattaccctttgttgaatcagtggtaatttacctctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaa 49897931  T
Q  220 tgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 264  Q
    ||||||| | ||||| ||| |  ||||||||| | ||||||||||    
T  49897930 tgaaggagaagaagaagttcgacgttcttgagctaaaaatggtaa 49897886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 5500739 - 5500885
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||||| ||||||||||||  | ||||||| ||||||| ||  |||| ||| ||||||| ||||||| ||| |||||||||||||||||| || |    
T  5500739 cctacattacctcttgatgaattgaagataatttatctctaataatctgtattatttgattctgaaacgaataagatggagatcacatgttgaat-aatg 5500837  T
Q  226 atatgaagatgtttgttgttcttgagatgaaaatggtaaatgattata 273  Q
    | |||||||  |||| |||| ||||||| |||||||||| ||||||||    
T  5500838 aaatgaagaaatttgatgtttttgagataaaaatggtaactgattata 5500885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 38839582 - 38839715
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||||||||||||||| ||  | ||||| ||  ||||||| ||||| ||||||||| |||||||||  |||   ||||||||||| ||||||||     
T  38839582 cctacattaccccttgatgaactgacggtaattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaaga 38839681  T
Q  226 atatgaagatgtttgttgttcttgagatgaaaat 259  Q
    | ||||||| ||||| ||||||||||||||||||    
T  38839682 agatgaagaggtttgatgttcttgagatgaaaat 38839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 395
Target Start/End: Complemental strand, 49898030 - 49897925
Alignment:
Q  291 gtggggcctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaa 389  Q
    ||||||| |||||||||| ||| |||||  | | ||||||||||||||||| || |||||||||||||| |||| || |||| |||||||||||||||||    
T  49898030 gtggggcgtacattaccctttgttgaatcagtggtaatttacctctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaa 49897931  T
Q  390 tgaagg 395  Q
    ||||||    
T  49897930 tgaagg 49897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 275
Target Start/End: Complemental strand, 52432786 - 52432666
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    ||||||||| || ||| ||| ||| |||||||| | |||| ||| ||| ||||||||| |||| ||||||||| ||||||| ||||  ||||||||||||    
T  52432786 taatttacc-ctgatggtaaatataattcgattatagaacaaattagatggagatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagat 52432688  T
Q  254 gaaaatggtaaatgattataag 275  Q
    ||||||||||| ||||||||||    
T  52432687 gaaaatggtaattgattataag 52432666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 52432742 - 52432666
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||    
T  52432742 agatggagatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataag 52432666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 3232273 - 3232174
Alignment:
Q  136 ccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaaga 234  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||| || |||  || |||| |||||| ||||||||||||||| | |||||||    
T  3232273 ccccttgatgaattaggggcaatttacctctaatgataagtatgattcgatactagaagtaaagagatggagattacatgttgaatgaagaagatgaaga 3232174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 259
Target Start/End: Original strand, 34601435 - 34601663
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||| |||||||||||||| ||||| |||| || ||||| ||||||| |||| ||| | |||| ||||| | ||||||||||  |||| ||| | ||    
T  34601435 agatggaaatcacatgttgaataaaggagatgaggaagtttgatgttcttaagataaaagttgtaattgattgt-aggaaaaaaccttatcagtgagacc 34601533  T
Q  129 tacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggat 227  Q
    |||| ||||||||||| |||| | | ||||||  ||||||||| || |||||||||||| |  || ||| |||| | | |||||||||||||| ||| |     
T  34601534 taca-taccccttgataaattagaggtaatttgtctctaatgacaactatgattcgattttataaggaaggagatgaatatcacatgttgaat-aagtag 34601631  T
Q  228 atgaagatgtttgttgttcttgagatgaaaat 259  Q
    ||||| | ||||| |||| |||||||||||||    
T  34601632 atgaaaacgtttgatgtttttgagatgaaaat 34601663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 3367908 - 3367806
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    |||||||| | ||||||||| ||||||   ||||||||||||| |||| ||||||||||||||||||||| || ||||| |  |||| ||||||||||||    
T  3367908 taatttacttttaatgataaatatgatataattctggaacgaaagagatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgagat 3367809  T
Q  254 gaa 256  Q
    |||    
T  3367808 gaa 3367806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 394
Target Start/End: Complemental strand, 3232273 - 3232184
Alignment:
Q  306 ccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||| || |||  || |||| |||||| |||||||||||||||    
T  3232273 ccccttgatgaattaggggcaatttacctctaatgataagtatgattcgatactagaagtaaagagatggagattacatgttgaatgaag 3232184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 390
Target Start/End: Original strand, 34601366 - 34601625
Alignment:
Q  131 cattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatat 229  Q
    ||||||||||| ||||||||| | |||||||||||| |||| || ||||||| |||  | ||| ||   ||| ||| |||||||||||||| ||||| ||    
T  34601366 cattaccccttaatgaattggtggtaatttacctcttatgacaattatgatttgatcatagaatgatgaagatggaaatcacatgttgaataaaggagat 34601465  T
Q  230 gaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaatt-gggttaatt 328  Q
    || || ||||| ||||||| |||| ||| | |||| ||||| | ||||||||||  |||| ||| | |||||| ||||||||||| |||| | | |||||    
T  34601466 gaggaagtttgatgttcttaagataaaagttgtaattgattgt-aggaaaaaaccttatcagtgagacctaca-taccccttgataaattagaggtaatt 34601563  T
Q  329 tacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaat 390  Q
    |  ||||||||| || |||||||||||| |  || ||| |||| | | ||||||||||||||    
T  34601564 tgtctctaatgacaactatgattcgattttataaggaaggagatgaatatcacatgttgaat 34601625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 46081054 - 46080969
Alignment:
Q  27 tcagatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 112  Q
    |||| ||||||| ||||||||| ||||||| ||||||| ||||  ||||||||||||||||||||||| ||||| |||| ||||||    
T  46081054 tcaggtggagattacatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaaaa 46080969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 41148568 - 41148651
Alignment:
Q  137 cccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaat 220  Q
    |||||||||||||||| ||||||| | ||||||| |||||  |||||||||| ||||||| |||| ||| ||||||||||||||    
T  41148568 cccttgatgaattggggtaatttatccctaatgaaaagtagaattcgattctagaacgaaggagatggatatcacatgttgaat 41148651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 41148568 - 41148651
Alignment:
Q  307 cccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaat 390  Q
    |||||||||||||||| ||||||| | ||||||| |||||  |||||||||| ||||||| |||| ||| ||||||||||||||    
T  41148568 cccttgatgaattggggtaatttatccctaatgaaaagtagaattcgattctagaacgaaggagatggatatcacatgttgaat 41148651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 46081048 - 46080969
Alignment:
Q  203 ggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 282  Q
    |||||| ||||||||| ||||||| ||||||| ||||  ||||||||||||||||||||||| ||||| |||| ||||||    
T  46081048 ggagattacatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaaaa 46080969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 3232209 - 3231979
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat-gaaaatggtaaatgattataaggaaaaaactctatccgtggggc 127  Q
    |||||||||| ||||||||||||||| | ||||||| ||  | |||||||||| | ||||||||||| | ||| |||| |||||||  |||| ||| |||    
T  3232209 agatggagattacatgttgaatgaagaagatgaagaagtg-gatgttcttgaggttgaaaatggtaactaattgtaag-aaaaaaca-tatcggtgaggc 3232113  T
Q  128 ctacattaccccttgatgaattgggt-taatttacctctaatga-taagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
     |||| || ||||||| || ||| |  |||||||||  | |||| ||||||  |||| ||| | ||||||| |||  | | ||||||||||||||||| |    
T  3232112 atacactatcccttgacgagttgagagtaatttaccattgatgactaagtagtattcaattatagaacgaaggaggtgaatatcacatgttgaatgaatg 3232013  T
Q  226 atatgaagatgtttgttgttcttgagatgaaaat 259  Q
    | ||||||| ||||||||||||||||||||||||    
T  3232012 acatgaagaagtttgttgttcttgagatgaaaat 3231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 7104387 - 7104311
Alignment:
Q  158 ttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaaga 234  Q
    |||| |||||||| |||||||||||||||||| |||||| |||| | | || ||||||||||||||||| |||||||    
T  7104387 ttacttctaatgacaagtatgattcgattctgaaacgaaagagatgaatattacatgttgaatgaaggagatgaaga 7104311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 281
Target Start/End: Complemental strand, 44330578 - 44330462
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 264  Q
    |||| ||||||||||||| ||||| |||  |||||||  |||||||||||| |||| | ||| ||||||| || || |||| |||| |||||||||||||    
T  44330578 taataataagtatgattcaattcttgaataaatgagatagagatcacatgtagaataatggaaatgaagaagtgtgatgtttttgatatgaaaatggtaa 44330479  T
Q  265 atgattataaggaaaaa 281  Q
    ||| || |||| |||||    
T  44330478 atggttgtaagaaaaaa 44330462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 5500739 - 5500833
Alignment:
Q  297 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaat 390  Q
    ||||||||||| ||||||||||||  | ||||||| ||||||| ||  |||| ||| ||||||| ||||||| ||| ||||||||||||||||||    
T  5500739 cctacattacctcttgatgaattgaagataatttatctctaataatctgtattatttgattctgaaacgaataagatggagatcacatgttgaat 5500833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 3367908 - 3367839
Alignment:
Q  324 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||||| | ||||||||| ||||||   ||||||||||||| |||| |||||||||||||||||||||    
T  3367908 taatttacttttaatgataaatatgatataattctggaacgaaagagatggagatcacatgttgaatgaa 3367839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 7104387 - 7104320
Alignment:
Q  328 ttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    |||| |||||||| |||||||||||||||||| |||||| |||| | | || ||||||||||||||||    
T  7104387 ttacttctaatgacaagtatgattcgattctgaaacgaaagagatgaatattacatgttgaatgaagg 7104320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 5500812 - 5500885
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattata 103  Q
    |||||||||||||||||||||| || || |||||||  |||| |||| ||||||| |||||||||| ||||||||    
T  5500812 agatggagatcacatgttgaat-aatgaaatgaagaaatttgatgtttttgagataaaaatggtaactgattata 5500885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 38839661 - 38839715
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat 89  Q
    ||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||    
T  38839661 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 38839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 3367863 - 3367806
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaa 86  Q
    ||||||||||||||||||||||||| || ||||| |  |||| |||||||||||||||    
T  3367863 agatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgagatgaa 3367806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 10775231 - 10775162
Alignment:
Q  212 atgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 281  Q
    |||||||| ||| || ||||||| ||||| ||||||| ||||||||||||||| ||||| |||| |||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaa 10775162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 10775231 - 10775162
Alignment:
Q  42 atgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 111  Q
    |||||||| ||| || ||||||| ||||| ||||||| ||||||||||||||| ||||| |||| |||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaa 10775162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 49897951 - 49897886
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||||||||||||||||||||||||||| | ||||| ||| |  ||||||||| | ||||||||||    
T  49897951 agatggagatcacatgttgaatgaaggagaagaagaagttcgacgttcttgagctaaaaatggtaa 49897886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 10775125 - 10775022
Alignment:
Q  172 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatta 271  Q
    ||||| ||||||||| |||||||||  | | | |||||||||||||||||||  | | |||||  |||| |||||| |||||||||||| ||  ||||||    
T  10775125 aagtaggattcgattatggaacgaagaaaatgaagatcacatgttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatgatatttgatta 10775026  T
Q  272 taag 275  Q
    ||||    
T  10775025 taag 10775022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 15321156 - 15321089
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaa 232  Q
    |||||| || ||||||| ||||||| || ||| |||| | |||| |||||||||||||||||||||||    
T  15321156 taatgacaattatgatttgattctgaaatgaaagagatgaagattacatgttgaatgaaggatatgaa 15321089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 24874715 - 24874597
Alignment:
Q  164 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatg-aagatgtttgttgttcttgagatgaaaatggt 262  Q
    ||||||| |||||  |||||||||| ||| |||| |||  ||||||||||||||||| | ||| ||| || | ||||| | ||||| | |||||||||||    
T  24874715 ctaatgacaagtagcattcgattctagaatgaataagacagagatcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggt 24874616  T
Q  263 aaatgattataaggaaaaa 281  Q
    || ||||| |||| |||||    
T  24874615 aattgattgtaagaaaaaa 24874597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 394
Target Start/End: Original strand, 38839582 - 38839680
Alignment:
Q  297 cctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||||||||||||||||||| ||  | ||||| ||  ||||||| ||||| ||||||||| |||||||||  |||   ||||||||||| ||||||||    
T  38839582 cctacattaccccttgatgaactgacggtaattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaag 38839680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 44330544 - 44330462
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 111  Q
    |||| |||||||||||| |||| | ||| ||||||| || || |||| |||| |||||||||||||||| || |||| |||||    
T  44330544 agatagagatcacatgtagaataatggaaatgaagaagtgtgatgtttttgatatgaaaatggtaaatggttgtaagaaaaaa 44330462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 7749084 - 7749024
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat 89  Q
    |||||||||||||||||| ||  ||| | |||||||  |||| ||||||||||||||||||    
T  7749084 agatggagatcacatgttaaacaaagaaaatgaagaaatttgatgttcttgagatgaaaat 7749024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 394
Target Start/End: Original strand, 32166593 - 32166820
Alignment:
Q  163 tctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggt 262  Q
    |||||||||||  | ||||| |||||  |||||| |||| | |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||| |    
T  32166593 tctaatgataaaaaagattcaattctaaaacgaaagagatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgat 32166692  T
Q  263 aaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctgga 361  Q
    || ||||  |||| ||||    |||||  || | | ||||||   | |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||    
T  32166693 aattgatagtaagaaaaa----ctatcgatgag-catacatttttctttgatgaattgggtgtaatttacctctaatgacaagtacgattcgattttgga 32166787  T
Q  362 acgaatgagaaggagatcacatgttgaatgaag 394  Q
    ||||| |||| | | |||||||||| |||||||    
T  32166788 acgaaagagatgtaaatcacatgttaaatgaag 32166820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 29969252 - 29969091
Alignment:
Q  127 cctacattaccccttgatgaattg-ggttaatttacctct-aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    |||||||||||||||||||||||| || ||||||||| || ||||| |||||  |||||||| ||||||||| |||| | | ||||||||||||||||||    
T  29969252 cctacattaccccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacgaaagagatgaatatcacatgttgaatgaag 29969153  T
Q  225 gatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactcta 287  Q
    |  | ||||| ||||| ||||||||| |  |||||||||| ||||| |||| |||||||||||    
T  29969152 gggaagaagaagtttgatgttcttga-aaaaaaatggtaactgattgtaagaaaaaaactcta 29969091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 32166629 - 32166820
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||| |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||| ||| ||||  |||| ||||    |||||  || | |     
T  32166629 agatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaa----ctatcgatgag-ca 32166723  T
Q  129 tacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    ||||||   | |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||| |||| | | |||||||||| |||||||    
T  32166724 tacatttttctttgatgaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaatgaag 32166820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 371
Target Start/End: Original strand, 35574610 - 35574805
Alignment:
Q  175 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataa 274  Q
    |||||||||||| |||||||||  ||| |||||| |||||||||||||| || ||||| |  |||| ||||||| |||||||||| |||| | ||| |||    
T  35574610 tatgattcgattttggaacgaaaaagatggagatgacatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaa 35574709  T
Q  275 ggaaaaaactctatccgtggggcctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgaga 371  Q
    |  |||||| |||||  || || || |||||  | ||||||||||| || ||||||||| ||||||| || |||||||||||| ||||||||| ||||    
T  35574710 g--aaaaaccctatcaatgaggtctccattattcattgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaacgaaagaga 35574805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 35574634 - 35574868
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||| |||||||||||||| || ||||| |  |||| ||||||| |||||||||| |||| | ||| ||||  |||||| |||||  || || |    
T  35574634 agatggagatgacatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaag--aaaaaccctatcaatgaggtc 35574731  T
Q  129 tacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggat 227  Q
    | |||||  | ||||||||||| || ||||||||| ||||||| || |||||||||||| ||||||||| ||||   | |||| ||||| |||||| |||    
T  35574732 tccattattcattgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaacgaaagagattaaaatcatatgttcaatgaaagat 35574831  T
Q  228 atgaagatgtttgttgttcttgagatgaaaatggtaa 264  Q
    ||||| |   ||  |||||||||||||||||| ||||    
T  35574832 atgaaaaaaattaatgttcttgagatgaaaatagtaa 35574868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 7405477 - 7405612
Alignment:
Q  121 gtggggcctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaa 219  Q
    ||||||| |||||||||||||||||| |||||  ||||||||| ||||| |||||    | |||||| ||||||||| |||| | |||||||||||||||    
T  7405477 gtggggcatacattaccccttgatgagttggggataatttacccctaatcataag----actcgattatggaacgaacgagatgaagatcacatgttgaa 7405572  T
Q  220 tgaaggatatgaagatgtttgttgttcttgagatgaaaat 259  Q
    || |||| ||||||| ||||| ||| ||||| || |||||    
T  7405573 tgtaggagatgaagacgtttgatgtgcttgacataaaaat 7405612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 395
Target Start/End: Complemental strand, 29969252 - 29969152
Alignment:
Q  297 cctacattaccccttgatgaattg-ggttaatttacctct-aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    |||||||||||||||||||||||| || ||||||||| || ||||| |||||  |||||||| ||||||||| |||| | | ||||||||||||||||||    
T  29969252 cctacattaccccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacgaaagagatgaatatcacatgttgaatgaag 29969153  T
Q  395 g 395  Q
    |    
T  29969152 g 29969152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 29093644 - 29093582
Alignment:
Q  172 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaaga 234  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| |||||||    
T  29093644 aagtatgatttgattatggaacgaaagagatggagatcacatgttgaatgaaggagatgaaga 29093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 37010315 - 37010404
Alignment:
Q  175 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 264  Q
    |||||||||||| ||||| ||| ||||  ||||||||||||| |||||| || ||||| | ||||| |||| ||||||||||||||||||    
T  37010315 tatgattcgattatggaatgaaggagatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatggtaa 37010404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 12736135 - 12736052
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 112  Q
    ||||||| ||||||||||||| |||||| ||||||| ||||| |||| || ||||| ||||||||| | ||| |||||||||||    
T  12736135 agatggacatcacatgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatggtaactaattgtaaggaaaaaa 12736052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 29093644 - 29093591
Alignment:
Q  342 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||    
T  29093644 aagtatgatttgattatggaacgaaagagatggagatcacatgttgaatgaagg 29093591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 6630524 - 6630604
Alignment:
Q  190 gaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatt 270  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||  |||  || |||| ||||||||||||||| |||||    
T  6630524 gaacgaatgagatggagatcacttgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgatt 6630604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 7405477 - 7405574
Alignment:
Q  291 gtggggcctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaa 389  Q
    ||||||| |||||||||||||||||| |||||  ||||||||| ||||| |||||    | |||||| ||||||||| |||| | |||||||||||||||    
T  7405477 gtggggcatacattaccccttgatgagttggggataatttacccctaatcataag----actcgattatggaacgaacgagatgaagatcacatgttgaa 7405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 12736136 - 12736052
Alignment:
Q  198 gagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 282  Q
    |||| ||| ||||||||||||| |||||| ||||||| ||||| |||| || ||||| ||||||||| | ||| |||||||||||    
T  12736136 gagatggacatcacatgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatggtaactaattgtaaggaaaaaa 12736052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 258
Target Start/End: Original strand, 6630308 - 6630435
Alignment:
Q  132 attaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatg 230  Q
    ||||||| ||||||||||| |  ||||||||| ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||||||||||||  | |||    
T  6630308 attaccctttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatgttgaatgaaaaagatg 6630407  T
Q  231 aagatgtttgttgttcttgagatgaaaa 258  Q
    || | ||||| |||||||||||| ||||    
T  6630408 aaaaagtttgatgttcttgagataaaaa 6630435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 37010339 - 37010404
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||| ||||||||||||| |||||| || ||||| | ||||| |||| ||||||||||||||||||    
T  37010339 agatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatggtaa 37010404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 29969170 - 29969091
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactcta 117  Q
    |||||||||||||||||||  | ||||| ||||| ||||||||| |  |||||||||| ||||| |||| |||||||||||    
T  29969170 atcacatgttgaatgaaggggaagaagaagtttgatgttcttga-aaaaaaatggtaactgattgtaagaaaaaaactcta 29969091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 6630533 - 6630604
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatt 100  Q
    ||||||||||||| |||| ||||||||| |||||||  |||  || |||| ||||||||||||||| |||||    
T  6630533 agatggagatcacttgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgatt 6630604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 258
Target Start/End: Original strand, 6803868 - 6803995
Alignment:
Q  132 attaccccttgatgaattggg-ttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatg 230  Q
    ||||||| |||||||||||||  ||||||||| ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||| ||||||||  | ||     
T  6803868 attaccctttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatggtgaatgaaaaagata 6803967  T
Q  231 aagatgtttgttgttcttgagatgaaaa 258  Q
    |||| ||||| |||| ||||||| ||||    
T  6803968 aagaagtttgatgtttttgagataaaaa 6803995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 29093617 - 29093582
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaaga 64  Q
    |||||||||||||||||||||||||||| |||||||    
T  29093617 agatggagatcacatgttgaatgaaggagatgaaga 29093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 393
Target Start/End: Original strand, 6630308 - 6630400
Alignment:
Q  302 attaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    ||||||| ||||||||||| |  ||||||||| ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||||||||||||    
T  6630308 attaccctttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatgttgaatgaa 6630400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 393
Target Start/End: Original strand, 6803868 - 6803960
Alignment:
Q  302 attaccccttgatgaattggg-ttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    ||||||| |||||||||||||  ||||||||| ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||| ||||||||    
T  6803868 attaccctttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatggtgaatgaa 6803960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 7405552 - 7405612
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat 89  Q
    ||||| ||||||||||||||||| |||| ||||||| ||||| ||| ||||| || |||||    
T  7405552 agatgaagatcacatgttgaatgtaggagatgaagacgtttgatgtgcttgacataaaaat 7405612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 13149009 - 13149133
Alignment:
Q  134 taccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaa 232  Q
    ||||||||||| |||||||  || |||||| ||| ||| ||||| | ||| ||||||||| ||| ||||  || ||||||| |||||| ||| | |||||    
T  13149009 taccccttgataaattggggatagtttacccctagtgacaagtagggttcaattctggaatgaaagagatagaaatcacatattgaattaagtagatgaa 13149108  T
Q  233 gatgtttgttgttcttgagatgaaa 257  Q
    ||  |||| |||| |||||||||||    
T  13149109 gaaatttgatgtttttgagatgaaa 13149133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 33897816 - 33897748
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    |||||| | ||||||||||||||||| || ||||  |||| |||| ||||||||||||| |||| ||||    
T  33897816 atggaggttacatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaattgat 33897748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 35574610 - 35574658
Alignment:
Q  345 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||||||||| |||||||||  ||| |||||| ||||||||||||||    
T  35574610 tatgattcgattttggaacgaaaaagatggagatgacatgttgaatgaa 35574658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 247
Target Start/End: Complemental strand, 25062565 - 25062352
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacatt 134  Q
    |||| ||| |||||| |||| | ||||||| ||||| | ||||||||||||||| ||||| ||||| |||| |||||||   ||  |||  |||||||||    
T  25062565 agattacaagttgaacgaagaagatgaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacatt 25062466  T
Q  135 accccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaag 233  Q
    |  ||||||||||||| || ||||||||| ||||| | ||||| |||| |||| |||||| || |||| | |||||||||||| ||||||| | ||||||    
T  25062465 attccttgatgaattgagggtaatttacccctaataacaagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcagatgaag 25062366  T
Q  234 atgtttgttgttct 247  Q
    | ||||| ||||||    
T  25062365 aagtttgatgttct 25062352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 394
Target Start/End: Complemental strand, 25062616 - 25062375
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    ||||||||  || |||| ||||||||||| ||||||||  |||  ||||  |||| ||| |||||| |||| | ||||||| ||||| | ||||||||||    
T  25062616 taatttacaactcatgacaagtatgattcaattctggattgaagaagaaaaagattacaagttgaacgaagaagatgaagaagtttgatattcttgagat 25062517  T
Q  254 gaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattc 352  Q
    ||||| ||||| ||||| |||| |||||||   ||  |||  ||||||||||  ||||||||||||| || ||||||||| ||||| | ||||| ||||     
T  25062516 gaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacattattccttgatgaattgagggtaatttacccctaataacaagtaggattt 25062417  T
Q  353 gattctggaacgaatgagaaggagatcacatgttgaatgaag 394  Q
    |||| |||||| || |||| | |||||||||||| |||||||    
T  25062416 gattatggaacaaaggagatgaagatcacatgtttaatgaag 25062375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 22051005 - 22050898
Alignment:
Q  128 ctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 226  Q
    ||||| |||||||| ||||||||||  |||||||||  ||||||||| ||||||||||||||| || |||||||| | ||||||||||||||||||||||    
T  22051005 ctacaatacccctttatgaattgggggtaatttacccttaatgataaatatgattcgattctgaaaggaatgagatgaagatcacatgttgaatgaagga 22050906  T
Q  227 tatgaaga 234  Q
     |||||||    
T  22050905 gatgaaga 22050898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 22051005 - 22050907
Alignment:
Q  298 ctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    ||||| |||||||| ||||||||||  |||||||||  ||||||||| ||||||||||||||| || |||||||| | |||||||||||||||||||||    
T  22051005 ctacaatacccctttatgaattgggggtaatttacccttaatgataaatatgattcgattctgaaaggaatgagatgaagatcacatgttgaatgaagg 22050907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 15131574 - 15131639
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||    
T  15131574 gagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 15131574 - 15131639
Alignment:
Q  204 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 269  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||    
T  15131574 gagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 22050775 - 22050719
Alignment:
Q  32 tggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaa 88  Q
    ||||||||||||||| ||||||||| ||||||| ||||| |||| ||||||| ||||    
T  22050775 tggagatcacatgttaaatgaaggaaatgaagaagtttgatgttgttgagattaaaa 22050719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 54000043 - 54000111
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    |||||||||||||||||||| || |  |||||  | |||| ||||||||||||||||||||||| ||||    
T  54000043 atggagatcacatgttgaataaatgtgatgaatttttttgatgttcttgagatgaaaatggtaattgat 54000111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 22050774 - 22050719
Alignment:
Q  203 ggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaa 258  Q
    |||||||||||||| ||||||||| ||||||| ||||| |||| ||||||| ||||    
T  22050774 ggagatcacatgttaaatgaaggaaatgaagaagtttgatgttgttgagattaaaa 22050719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 25234202 - 25234264
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    ||||||| ||||  ||||||||| ||||  |||| ||||||||||||||||||||||| ||||    
T  25234202 atcacatattgacggaaggatattaagaaatttgatgttcttgagatgaaaatggtaactgat 25234264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 25234202 - 25234264
Alignment:
Q  207 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 269  Q
    ||||||| ||||  ||||||||| ||||  |||| ||||||||||||||||||||||| ||||    
T  25234202 atcacatattgacggaaggatattaagaaatttgatgttcttgagatgaaaatggtaactgat 25234264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 54000045 - 54000111
Alignment:
Q  203 ggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 269  Q
    |||||||||||||||||| || |  |||||  | |||| ||||||||||||||||||||||| ||||    
T  54000045 ggagatcacatgttgaataaatgtgatgaatttttttgatgttcttgagatgaaaatggtaattgat 54000111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 20512797 - 20512882
Alignment:
Q  175 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatg 260  Q
    |||||||||||| || |||||| || | |||||| ||||||| ||||||| | ||||||| ||||| ||||  | |||||||||||    
T  20512797 tatgattcgattatgaaacgaaggatatggagattacatgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatg 20512882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 2563115 - 2562969
Alignment:
Q  85 aaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcga 184  Q
    |||||| ||| || || |||| ||||| |||||||  || | ||||||||||||||||||||||  || ||||||||| | |||||||||||||||||||    
T  2563115 aaaatgataactgcttgtaagaaaaaatctctatcaatgagacctacattaccccttgatgaatatgggtaatttacc-caaatgataagtatgattcga 2563017  T
Q  185 ttctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaa 232  Q
    ||||| ||| ||||| |  |||||||||||||||||||| || |||||    
T  2563016 ttctgaaacaaatgatatagagatcacatgttgaatgaaagagatgaa 2562969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 393
Target Start/End: Complemental strand, 2563115 - 2562978
Alignment:
Q  255 aaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcga 354  Q
    |||||| ||| || || |||| ||||| |||||||  || | ||||||||||||||||||||||  || ||||||||| | |||||||||||||||||||    
T  2563115 aaaatgataactgcttgtaagaaaaaatctctatcaatgagacctacattaccccttgatgaatatgggtaatttacc-caaatgataagtatgattcga 2563017  T
Q  355 ttctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    ||||| ||| ||||| |  ||||||||||||||||||||    
T  2563016 ttctgaaacaaatgatatagagatcacatgttgaatgaa 2562978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 39341347 - 39341215
Alignment:
Q  133 ttaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatga 231  Q
    |||||| |||||||||| ||| |||||||||||||||||||| || ||||| ||| | |||||||  | | ||||||| |||||||||||||||| ||||    
T  39341347 ttaccctttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttgaatgaaggagatga 39341248  T
Q  232 agatgtttgttgttcttgagatgaaaatggtaa 264  Q
    | | ||||| | ||||| |||||||||||||||    
T  39341247 aaaagtttgatattcttaagatgaaaatggtaa 39341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 48646526 - 48646417
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 264  Q
    |||||||||| | ||||||||| || |||||||||||  |||| || ||||||||||||| ||||||| | ||||| ||||||| ||||||||||||| |    
T  48646526 taatgataagcaggattcgattatgaaacgaatgagatagagaccatatgttgaatgaagaatatgaa-aagtttgatgttcttaagatgaaaatggtca 48646428  T
Q  265 atgattataag 275  Q
     ||||||||||    
T  48646427 ttgattataag 48646417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 54437887 - 54437653
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||| | ||| |||| ||||| | | ||||||| ||||| |||| ||||||| |||||||||| ||||| |||| |||||  |||||   || |||     
T  54437887 agatggaaaccacgtgttaaatgaggaagatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaaa--tctattaatgaggca 54437790  T
Q  129 tacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggat 227  Q
    | |||||||| ||||| |||| |||  |||||||   | |||| ||  ||||||  ||||||||||||| |||| | || | ||||||| ||||||||||    
T  54437789 tgcattacccattgattaatttggggaaatttacgcatgatgacaaccatgattaaattctggaacgaaagagatgaagtttacatgttaaatgaaggat 54437690  T
Q  228 atgaagatgtttgttgttcttgagatgaaaatggtaa 264  Q
    ||||||| ||||  |||| ||||||||||||||||||    
T  54437689 atgaagaagtttaatgttattgagatgaaaatggtaa 54437653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 281
Target Start/End: Complemental strand, 54437961 - 54437805
Alignment:
Q  126 gcctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||| |  || |||  ||| ||| | ||| |||| ||||| |    
T  54437961 gcctacgttaccccttgttgaattaggggtaatttacctctaatgataaatatgatttgattttaaaatgaaaaagatggaaaccacgtgttaaatgagg 54437862  T
Q  225 gatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 281  Q
     | ||||||| ||||| |||| ||||||| |||||||||| ||||| |||| |||||    
T  54437861 aagatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaaa 54437805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 51260553 - 51260665
Alignment:
Q  132 attaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatga 231  Q
    |||||| |||||||||||||| | |||||||| | |||||||||| |||||||||||  || ||| || | ||| ||||||||||||||||| || ||||    
T  51260553 attacctcttgatgaattggggtgatttacct-tcatgataagtaggattcgattctaaaatgaaagatatggaaatcacatgttgaatgaatgagatga 51260651  T
Q  232 agatgtttgttgtt 245  Q
    |||  |||||||||    
T  51260652 agacctttgttgtt 51260665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 20519245 - 20519353
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat 253  Q
    ||||||| || |||||||||||  ||||  ||| |||||| || |||| |||||||||||||| |||||| || |||||||  ||||  |||||||||||    
T  20519245 taatttaactataatgataagttggattaaattttggaacaaaggagatggagatcacatgtttaatgaaagagatgaagaaatttgacgttcttgagat 20519344  T
Q  254 gaaaatggt 262  Q
    |||||||||    
T  20519345 gaaaatggt 20519353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 395
Target Start/End: Complemental strand, 39341347 - 39341254
Alignment:
Q  303 ttaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    |||||| |||||||||| ||| |||||||||||||||||||| || ||||| ||| | |||||||  | | ||||||| |||||||||||||||    
T  39341347 ttaccctttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttgaatgaagg 39341254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 20519290 - 20519353
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggt 92  Q
    |||||||||||||||||| |||||| || |||||||  ||||  ||||||||||||||||||||    
T  20519290 agatggagatcacatgtttaatgaaagagatgaagaaatttgacgttcttgagatgaaaatggt 20519353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 39341278 - 39341215
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    ||||||||| |||||||||||||||| ||||| | ||||| | ||||| |||||||||||||||    
T  39341278 atggagatctcatgttgaatgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaa 39341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 393
Target Start/End: Original strand, 51260553 - 51260643
Alignment:
Q  302 attaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 393  Q
    |||||| |||||||||||||| | |||||||| | |||||||||| |||||||||||  || ||| || | ||| |||||||||||||||||    
T  51260553 attacctcttgatgaattggggtgatttacct-tcatgataagtaggattcgattctaaaatgaaagatatggaaatcacatgttgaatgaa 51260643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 54437961 - 54437900
Alignment:
Q  296 gcctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgatt 356  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||| ||||||| ||||    
T  54437961 gcctacgttaccccttgttgaattaggggtaatttacctctaatgataaatatgatttgatt 54437900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 7938220 - 7938121
Alignment:
Q  127 cctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    |||||||||||| ||||||||||| || |||||||||  ||||||||| || ||||||||||| || | ||  | | ||||||| |||||||||||||||    
T  7938220 cctacattaccc-ttgatgaattgcgtgtaatttacccttaatgataaataagattcgattctagagcaaagaaaacggagatcgcatgttgaatgaagg 7938122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 13283806 - 13283894
Alignment:
Q  171 taagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat 259  Q
    |||||| ||||||||||| |||| || | || |||||||||| |||||||||| ||  |||| | ||||| |||||||| |||||||||    
T  13283806 taagtaggattcgattctagaacaaaagtgatggagatcacacgttgaatgaatgagttgaataagtttgatgttcttgtgatgaaaat 13283894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 48646492 - 48646417
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    |||| |||| || ||||||||||||| ||||||| | ||||| ||||||| ||||||||||||| | ||||||||||    
T  48646492 agatagagaccatatgttgaatgaagaatatgaaaa-gtttgatgttcttaagatgaaaatggtcattgattataag 48646417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 395
Target Start/End: Complemental strand, 7938220 - 7938122
Alignment:
Q  297 cctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 395  Q
    |||||||||||| ||||||||||| || |||||||||  ||||||||| || ||||||||||| || | ||  | | ||||||| |||||||||||||||    
T  7938220 cctacattaccc-ttgatgaattgcgtgtaatttacccttaatgataaataagattcgattctagagcaaagaaaacggagatcgcatgttgaatgaagg 7938122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 42091793 - 42091955
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattac 136  Q
    |||||||||| |||||| || ||||| | ||||| |||| |||||||||||||| ||| | ||| |||||||||| |   ||  ||| | | |||| |||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaaggaaaaagc---attggtgagacatacaatac 42091889  T
Q  137 cccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgaga 201  Q
    ||||||| ||||| ||| ||||||||| ||||| | ||||| || | |||| ||||||||| ||||    
T  42091890 cccttgacgaattgggggtaatttacccctaatcacaagtaagacttgattatggaacgaaagaga 42091955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 371
Target Start/End: Original strand, 42091793 - 42091955
Alignment:
Q  207 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattac 306  Q
    |||||||||| |||||| || ||||| | ||||| |||| |||||||||||||| ||| | ||| |||||||||| |   ||  ||| | | |||| |||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaaggaaaaagc---attggtgagacatacaatac 42091889  T
Q  307 cccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgaga 371  Q
    ||||||| ||||| ||| ||||||||| ||||| | ||||| || | |||| ||||||||| ||||    
T  42091890 cccttgacgaattgggggtaatttacccctaatcacaagtaagacttgattatggaacgaaagaga 42091955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 45228277 - 45228378
Alignment:
Q  155 aatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatg 254  Q
    |||||||  ||| |||||||||| |||||||| |||||| ||||||  ||| ||||||| ||||||| ||   ||||| | ||||  |||||||||||||    
T  45228277 aatttacacctattgataagtataattcgattttggaacaaatgagttggatatcacatattgaatgcag---atgaaaaagtttaatgttcttgagatg 45228373  T
Q  255 aaaat 259  Q
    |||||    
T  45228374 aaaat 45228378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 36907 - 37035
Alignment:
Q  140 ttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggatatgaagatgtt 238  Q
    |||||||||||| | ||||||||   |||| ||||||| ||||||||| || ||| ||||||| | |||||||||||||||| || || |||||||  ||    
T  36907 ttgatgaattggaggtaatttacacataataataagtaggattcgattatgaaacaaatgagatgaagatcacatgttgaataaacgagatgaagaaatt 37006  T
Q  239 tgttgt-tcttgagatgaaaatggtaaat 266  Q
    || ||| | || ||||||||||| |||||    
T  37007 tgatgtgttttaagatgaaaatgataaat 37035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 36907 - 36988
Alignment:
Q  310 ttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaat 390  Q
    |||||||||||| | ||||||||   |||| ||||||| ||||||||| || ||| ||||||| | ||||||||||||||||    
T  36907 ttgatgaattggaggtaatttacacataataataagtaggattcgattatgaaacaaatgagatgaagatcacatgttgaat 36988  T

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Target: scaffold0564 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 5293 - 5334
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttg 70  Q
    |||| ||||||||||||||||||||||| || ||||||||||    
T  5293 agatagagatcacatgttgaatgaaggagataaagatgtttg 5334  T

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Target: scaffold0564; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 5298 - 5334
Alignment:
Q  204 gagatcacatgttgaatgaaggatatgaagatgtttg 240  Q
    ||||||||||||||||||||||| || ||||||||||    
T  5298 gagatcacatgttgaatgaaggagataaagatgtttg 5334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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