View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_81 (Length: 393)
Name: NF1126_low_81
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 5527146 - 5527492
Alignment:
| Q |
28 |
catctttttgggtggttgaatttggacccatcaactaaaatttatataggcttagaggaaaaagcctaaaggtaacaaagaaattgacatccggttttta |
127 |
Q |
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| T |
5527146 |
catctttttgggtggttgaatttggactcatcaactaaaatttatataggcttagagaaaaaagcctaaaggtaacaaagaaattgacatccggttttta |
5527245 |
T |
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| Q |
128 |
ctgcaattgggaattataagtatctactcaaattaccactgtggttttctttagcaaaaagaaagggttcggaccaaacatcagtcacccaccctaaaga |
227 |
Q |
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| T |
5527246 |
ctgcaattgggaattataagtatctactcaaattaccactgtggttttctttagcaaaaagaaagggttgggaccaaacatcagtcacccaccctaaaga |
5527345 |
T |
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| Q |
228 |
agagagatagagaaataagaacataaatatgttaccttatatatatagtttgagtaattttgttgatctttaatatttttaaactttggtggtaaaatag |
327 |
Q |
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| T |
5527346 |
agagagatagagaaataagaacataaatatgttacct----tatatagtttgagtaattttgttgatctttaatatttttaaactatggtggaaaaatag |
5527441 |
T |
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| Q |
328 |
tgctattgactttcaaagagggccatggacaccaatgcttgcttttagtat |
378 |
Q |
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| T |
5527442 |
tgctattgactttcaaagagggccatggacaccaatgcttgcttttagtat |
5527492 |
T |
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