View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_84 (Length: 386)

Name: NF1126_low_84
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_84
NF1126_low_84
[»] chr2 (13 HSPs)
chr2 (192-378)||(28215862-28216048)
chr2 (18-195)||(28216069-28216246)
chr2 (291-373)||(32309070-32309152)
chr2 (296-373)||(32565683-32565760)
chr2 (296-373)||(32806868-32806945)
chr2 (296-373)||(32815305-32815382)
chr2 (291-378)||(32799909-32799996)
chr2 (227-331)||(28220119-28220227)
chr2 (200-232)||(32309083-32309115)
chr2 (200-232)||(32565720-32565752)
chr2 (200-232)||(32799951-32799983)
chr2 (200-232)||(32806905-32806937)
chr2 (200-232)||(32815342-32815374)
[»] chr6 (2 HSPs)
chr6 (296-378)||(301229-301311)
chr6 (200-232)||(301237-301269)
[»] chr4 (1 HSPs)
chr4 (24-62)||(21453239-21453277)
[»] chr3 (1 HSPs)
chr3 (24-65)||(26774263-26774304)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 192 - 378
Target Start/End: Complemental strand, 28216048 - 28215862
Alignment:
Q  192 gttataaaaagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcccgcttctattctcttctccttcactccagc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28216048 gttataaaaagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcctgcttctattctcttctccttcactccagc 28215949  T
Q  292 atcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcatctc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28215948 atcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctc 28215862  T

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Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
Q  18 ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28216246 ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 28216147  T
Q  118 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28216146 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta 28216069  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 32309070 - 32309152
Alignment:
Q  291 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttc 373  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||    
T  32309070 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttc 32309152  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 32565760 - 32565683
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttc 373  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||    
T  32565760 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttc 32565683  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 32806945 - 32806868
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttc 373  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||    
T  32806945 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttc 32806868  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 32815382 - 32815305
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttc 373  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||    
T  32815382 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttc 32815305  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 32799996 - 32799909
Alignment:
Q  291 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcatctc 378  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||| ||||    
T  32799996 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctc 32799909  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 28220119 - 28220227
Alignment:
Q  227 aacccaataacttcccaaacaagtcttcact--ttcccgcttct--attctcttctccttcactccagcatcatcatcatcaagaaaatgaggagattct 322  Q
    |||| |||||||||||||||||||||  |||  |||||||||||  || ||||||||||||| ||||||||||| ||||||||||||||||||||| |||    
T  28220119 aacctaataacttcccaaacaagtctctactctttcccgcttctttatcctcttctccttcaatccagcatcattatcatcaagaaaatgaggagaatct 28220218  T
Q  323 tcatcttca 331  Q
    |||||||||    
T  28220219 tcatcttca 28220227  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 32309083 - 32309115
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32309083 aagaaaatgaggagattcttcatcttcaaccca 32309115  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32565752 - 32565720
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32565752 aagaaaatgaggagattcttcatcttcaaccca 32565720  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32799983 - 32799951
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32799983 aagaaaatgaggagattcttcatcttcaaccca 32799951  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32806937 - 32806905
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32806937 aagaaaatgaggagattcttcatcttcaaccca 32806905  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32815374 - 32815342
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32815374 aagaaaatgaggagattcttcatcttcaaccca 32815342  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 301229 - 301311
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcatctc 378  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||| ||||    
T  301229 tcatcatcaagaaaatgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctc 301311  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 301237 - 301269
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    ||||||||||| |||||||||||||||||||||    
T  301237 aagaaaatgagaagattcttcatcttcaaccca 301269  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
Q  24 ttttcattaggtagctcatccttatgatgagtgagtagt 62  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  21453239 ttttcattgggtagctcatccttgtgatgagtgagtagt 21453277  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
Q  24 ttttcattaggtagctcatccttatgatgagtgagtagttcc 65  Q
    |||||| || |||| |||||||||||||||||||||||||||    
T  26774263 ttttcactacgtagttcatccttatgatgagtgagtagttcc 26774304  T

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