View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_85 (Length: 381)
Name: NF1126_low_85
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_85 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 3620908 - 3620686
Alignment:
| Q |
51 |
aggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattga |
150 |
Q |
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| T |
3620908 |
aggaacatctcaatcctaataataggaaaaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattga |
3620809 |
T |
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| Q |
151 |
tctcaccaatgataacatcaaagctgtcgttatggtatgttctcatgattttcaatat---ttctttttggttatatgccctgttatatagtgttcagaa |
247 |
Q |
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| T |
3620808 |
tctcaccaataatcacatcaaagccgtcgttatggtatgttctcgtgacttttaatatatatatttttttgttttataccctgttatataatgttccgaa |
3620709 |
T |
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| Q |
248 |
cactcttttcaagatattattcg |
270 |
Q |
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|||||||||||||||||| |||| |
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| T |
3620708 |
cactcttttcaagatattgttcg |
3620686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 3631303 - 3631164
Alignment:
| Q |
53 |
gaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatc |
152 |
Q |
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| T |
3631303 |
gaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatc |
3631204 |
T |
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| Q |
153 |
tcaccaatgataacatcaaagctgtcgttatggtatgttc |
192 |
Q |
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| T |
3631203 |
tcaccaatgatcacatcaaatccgtccttatggtatgttc |
3631164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 14782 - 14921
Alignment:
| Q |
53 |
gaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaattgatc |
152 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14782 |
gaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatc |
14881 |
T |
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| Q |
153 |
tcaccaatgataacatcaaagctgtcgttatggtatgttc |
192 |
Q |
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| T |
14882 |
tcaccaatgatcacatcaaatccgtccttatggtatgttc |
14921 |
T |
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