View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_86 (Length: 380)

Name: NF1126_low_86
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_86
NF1126_low_86
[»] chr3 (34 HSPs)
chr3 (1-346)||(5261910-5262255)
chr3 (1-343)||(5278640-5278982)
chr3 (71-212)||(6898194-6898335)
chr3 (300-346)||(6880488-6880534)
chr3 (85-346)||(6723875-6724136)
chr3 (300-341)||(6898065-6898106)
chr3 (108-216)||(6257304-6257412)
chr3 (300-346)||(5296717-5296763)
chr3 (289-335)||(6450792-6450838)
chr3 (289-343)||(6481983-6482037)
chr3 (300-346)||(6593364-6593410)
chr3 (289-335)||(6730720-6730766)
chr3 (159-216)||(6243419-6243476)
chr3 (271-339)||(7585853-7585921)
chr3 (159-195)||(7748125-7748161)
chr3 (175-223)||(8570835-8570883)
chr3 (272-343)||(4390896-4390967)
chr3 (271-338)||(5266062-5266129)
chr3 (271-334)||(6556697-6556760)
chr3 (271-334)||(6733661-6733724)
chr3 (303-346)||(6915073-6915116)
chr3 (300-334)||(6841579-6841613)
chr3 (303-337)||(6945252-6945286)
chr3 (300-346)||(7747974-7748020)
chr3 (305-346)||(6140258-6140299)
chr3 (305-346)||(6166869-6166910)
chr3 (305-346)||(6243289-6243330)
chr3 (305-346)||(6257174-6257215)
chr3 (305-346)||(6263654-6263695)
chr3 (159-216)||(6593223-6593280)
chr3 (305-346)||(13275420-13275461)
chr3 (108-216)||(6851097-6851205)
chr3 (159-199)||(6880635-6880675)
chr3 (289-337)||(8587907-8587955)
[»] scaffold0425 (2 HSPs)
scaffold0425 (303-346)||(13548-13591)
scaffold0425 (300-334)||(9774-9808)
[»] scaffold1643 (1 HSPs)
scaffold1643 (300-338)||(153-191)
[»] scaffold2053 (1 HSPs)
scaffold2053 (156-216)||(123-183)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 5262255 - 5261910
Alignment:
Q  1 ttgagtcctctctagagcaaattttgttcaacagttcctctcttgaaaagttgtatgatggtgattacgatggtgaaaatcttaaatggccctcttttga 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  5262255 ttgagtcctctctagagcaaattttgttcaacagttcctcccttgaaaagttgtatgttggtgattacgatggtgaaaatcttgaatggccctcttttga 5262156  T
Q  101 tttgcgaagctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5262155 tttgcgaagctgtaattcactttgcactctgtctatatctggttggtgttcctcatccttgccttttgcactgaacttgttcaccaatcttcattctcta 5262056  T
Q  201 gatttgtacgattgtcgacagctcaaattgtttctgcaaagaggtttactttccagcttgagcaccctccgaataaacaaatgccctgaacttattgcat 300  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5262055 gatttgtacgattgtcgacagctcaaattgtttccacaaagaggtttaccttccagcttgagcaccctccgaataaacaaattccctgaacttattgcat 5261956  T
Q  301 cgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  5261955 tgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 5261910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 5278982 - 5278640
Alignment:
Q  1 ttgagtcctctctagagcaaattttgttcaacagttcctctcttgaaaagttgtatgatggtgattacgatggtgaaaatcttaaatggccctcttttga 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||| ||||||||||||||||    
T  5278982 ttgagtcctctctagaacaaattttgttcaacagttcctctcttgaacagttgaatgttggtgactacgatggtgaaaatcttgaatggccctcttttga 5278883  T
Q  101 tttgcgaagctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctcta 200  Q
    ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  5278882 tttgcgaagttgtaattcactttgcactctgtctatatccggatggtgttcctcatccttgccttttgcacttaacttgtccaccaatcttcattctcta 5278783  T
Q  201 gatttgtacgattgtcgacagctcaaattgtttctgcaaagaggtttactttccagcttgagcaccctccgaataaacaaatgccctgaacttattgcat 300  Q
    |||||||| ||||| ||||||||||||| |||||  |||||||||||||  ||| || |||| | ||||||||||||||||||||||||||| |||||||    
T  5278782 gatttgtatgattgccgacagctcaaatcgtttccacaaagaggtttaccgtcccgcctgagtagcctccgaataaacaaatgccctgaactgattgcat 5278683  T
Q  301 cgagagaggagtggggtttgttcgaactcaattctctgaaaga 343  Q
    | ||| |||||||||||||||||||||| ||||||||||||||    
T  5278682 caagaaaggagtggggtttgttcgaactaaattctctgaaaga 5278640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 6898335 - 6898194
Alignment:
Q  71 tggtgaaaatcttaaatggccctcttttgatttgcgaagctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgca 170  Q
    |||| |||||||  ||||| ||||||| ||| || | |||||||||||||||||||||||  ||||| | ||||||   || || || ||||| ||||||    
T  6898335 tggtcaaaatctagaatggtcctctttggatatgtgtagctgtaattcactttgcactctaactataacaggttggcactcttcctccttgccatttgca 6898236  T
Q  171 ctgaacttgttcaccaatcttcattctctagatttgtacgat 212  Q
    ||| ||||||||||||||||||||||||| |  |||||||||    
T  6898235 ctgcacttgttcaccaatcttcattctctggtgttgtacgat 6898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 6880534 - 6880488
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  6880534 tcgagagaggagtggggtttgttccaactcaattctctgaaacaatt 6880488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 346
Target Start/End: Original strand, 6723875 - 6724136
Alignment:
Q  85 aatggccctcttttgatttgcgaagctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcac 184  Q
    ||||| ||||||| ||| || | ||||||||||| ||| |||||||  ||||| | ||||||   || || || ||||||||||| ||  ||||| ||||    
T  6723875 aatggtcctctttggatatgtgtagctgtaattctcttcgcactctaactataacaggttggcactcttcctccttgccttttgctctacacttgctcac 6723974  T
Q  185 caatcttcattctctagatttgtacgattgtcgacagctcaaattgtttctgcaaagaggtttactttccagcttgagcaccctccgaataaacaaatgc 284  Q
    ||||||| ||||||| | |||||||||||||| || |||  | | |||| |    ||    |||| ||||||| |  ||| |||||||||| | | |||     
T  6723975 caatcttaattctctcgttttgtacgattgtccactgctggagtcgtttttcggcaggcagttaccttccagcctatgcagcctccgaatagaaagatgt 6724074  T
Q  285 cctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||| || | || || |||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  6724075 cctaaattaatggcttcgagagaggagtggggtttgttccaactcgattctctgaaacaatt 6724136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 6898106 - 6898065
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattctctgaaa 341  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  6898106 tcgagagaggagtggggtttgttccaactcaattctctgaaa 6898065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 6257412 - 6257304
Alignment:
Q  108 agctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgt 207  Q
    |||||| |||| |||||||||||  ||||| | ||||||   || || || ||||||||||||||  ||||||||||||||||| ||||||| |  ||||    
T  6257412 agctgttattccctttgcactctaactataacaggttggcactcttcttccttgccttttgcactacacttgttcaccaatcttaattctctcgtgttgt 6257313  T
Q  208 acgattgtc 216  Q
    |||||||||    
T  6257312 acgattgtc 6257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 5296763 - 5296717
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  5296763 tcgagagagaagtgggggttgttccaactcaattctctgaaagaatt 5296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 6450792 - 6450838
Alignment:
Q  289 aacttattgcatcgagagaggagtggggtttgttcgaactcaattct 335  Q
    |||| ||||| |||||||||||||||||||||||| |||||||||||    
T  6450792 aactgattgcttcgagagaggagtggggtttgttccaactcaattct 6450838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 6481983 - 6482037
Alignment:
Q  289 aacttattgcatcgagagaggagtggggtttgttcgaactcaattctctgaaaga 343  Q
    |||| ||||| || ||||| ||||||||||||||| |||||||||||||||||||    
T  6481983 aactgattgcttcaagagaagagtggggtttgttccaactcaattctctgaaaga 6482037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 6593364 - 6593410
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  6593364 tcgagagaggagtggggtttgttccaactcgattctctgaaacaatt 6593410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 6730720 - 6730766
Alignment:
Q  289 aacttattgcatcgagagaggagtggggtttgttcgaactcaattct 335  Q
    |||| ||||| |||||||||||||||||||||||| |||||||||||    
T  6730720 aactgattgcttcgagagaggagtggggtttgttccaactcaattct 6730766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 6243476 - 6243419
Alignment:
Q  159 ttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtc 216  Q
    ||||||||||||||  ||||||||||||||||| ||||||| |  |||||||||||||    
T  6243476 ttgccttttgcactacacttgttcaccaatcttaattctctcgtgttgtacgattgtc 6243419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 7585921 - 7585853
Alignment:
Q  271 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctga 339  Q
    ||||| |||| |||||  |||| ||||| | ||||||| |||||||||||||| |||||||||||||||    
T  7585921 gaatatacaattgcccaaaactgattgctttgagagagcagtggggtttgttccaactcaattctctga 7585853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 7748161 - 7748125
Alignment:
Q  159 ttgccttttgcactgaacttgttcaccaatcttcatt 195  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7748161 ttgccttttgcactgcacttgttcaccaatcttcatt 7748125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 8570835 - 8570883
Alignment:
Q  175 acttgttcaccaatcttcattctctagatttgtacgattgtcgacagct 223  Q
    ||||||||||||||||||||| |||||| |||| |||||||| ||||||    
T  8570835 acttgttcaccaatcttcattatctagagttgtccgattgtccacagct 8570883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 4390896 - 4390967
Alignment:
Q  272 aataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctgaaaga 343  Q
    ||||| ||| |||||  |||| ||||| | ||||| |||||||||||||||| ||||||||||||| |||||    
T  4390896 aataatcaagtgcccaaaactaattgctttgagaggggagtggggtttgttccaactcaattctctaaaaga 4390967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 5266129 - 5266062
Alignment:
Q  271 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctg 338  Q
    |||||| ||| |||||  |||| ||||| ||||||| |||||||||||||||| |||| |||||||||    
T  5266129 gaataaccaagtgcccaaaactaattgcttcgagaggggagtggggtttgttccaactaaattctctg 5266062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 6556697 - 6556760
Alignment:
Q  271 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattc 334  Q
    ||||| |||| |||||  |||| ||||  |||||||||||||||||||||||| ||||||||||    
T  6556697 gaatatacaattgcccaaaactgattggttcgagagaggagtggggtttgttccaactcaattc 6556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 6733724 - 6733661
Alignment:
Q  271 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattc 334  Q
    ||||| |||| |||||  |||| ||||  |||||||||||||||||||||||| ||||||||||    
T  6733724 gaatacacaattgcccaaaactgattggttcgagagaggagtggggtttgttccaactcaattc 6733661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 6915116 - 6915073
Alignment:
Q  303 agagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||    
T  6915116 agagaggagtggggtttgttccaactcaattctctaaaacaatt 6915073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 6841579 - 6841613
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattc 334  Q
    |||||||||||||||||||||||| ||||||||||    
T  6841579 tcgagagaggagtggggtttgttccaactcaattc 6841613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 6945286 - 6945252
Alignment:
Q  303 agagaggagtggggtttgttcgaactcaattctct 337  Q
    ||||||||||||||||||||| |||||||||||||    
T  6945286 agagaggagtggggtttgttccaactcaattctct 6945252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 7748020 - 7747974
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    |||||||||||||||||||||||| ||||||| ||||| ||| ||||    
T  7748020 tcgagagaggagtggggtttgttccaactcaaatctctaaaacaatt 7747974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 6140299 - 6140258
Alignment:
Q  305 agaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6140299 agaggagtggggtttgttcaaactcaaatctctgaaacaatt 6140258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 6166910 - 6166869
Alignment:
Q  305 agaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6166910 agaggagtggggtttgttcaaactcaaatctctgaaacaatt 6166869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 6243330 - 6243289
Alignment:
Q  305 agaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6243330 agaggagtggggtttgttccaactcaaatctctgaaacaatt 6243289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 6257215 - 6257174
Alignment:
Q  305 agaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6257215 agaggagtggggtttgttccaactcaaatctctgaaacaatt 6257174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 6263695 - 6263654
Alignment:
Q  305 agaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6263695 agaggagtggggtttgttccaactcaaatctctgaaacaatt 6263654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 6593223 - 6593280
Alignment:
Q  159 ttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtc 216  Q
    ||||||||||| ||  ||||| ||||||||||| ||||||| | ||||||||||||||    
T  6593223 ttgccttttgctctacacttgctcaccaatcttaattctctcgttttgtacgattgtc 6593280  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 13275420 - 13275461
Alignment:
Q  305 agaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  13275420 agaggagtggggtttgttcaaactcaaatctctgaaacaatt 13275461  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 6851097 - 6851205
Alignment:
Q  108 agctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgt 207  Q
    ||||||||||| ||| |||||||  ||| | | ||||||  ||| || || |||||||||||||   | ||||||| ||||||| ||||||| | |||||    
T  6851097 agctgtaattctcttcgcactctaactacaacaggttggcattcttcctccttgccttttgcaccacaattgttcaacaatcttgattctcttgttttgt 6851196  T
Q  208 acgattgtc 216  Q
    |||||||||    
T  6851197 acgattgtc 6851205  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 6880675 - 6880635
Alignment:
Q  159 ttgccttttgcactgaacttgttcaccaatcttcattctct 199  Q
    ||||||||| ||||| ||||||||||||||||| |||||||    
T  6880675 ttgccttttccactgcacttgttcaccaatcttaattctct 6880635  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 8587955 - 8587907
Alignment:
Q  289 aacttattgcatcgagagaggagtggggtttgttcgaactcaattctct 337  Q
    |||| ||||| ||||||||| | |||||||||||| |||||||||||||    
T  8587955 aactgattgcttcgagagagcaatggggtttgttccaactcaattctct 8587907  T

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Target: scaffold0425 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 13548 - 13591
Alignment:
Q  303 agagaggagtggggtttgttcgaactcaattctctgaaagaatt 346  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  13548 agagaggagtggggtttgttccaactcaattctctgaaacaatt 13591  T

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Target: scaffold0425; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 9774 - 9808
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattc 334  Q
    |||||||||||||||||||||||| ||||||||||    
T  9774 tcgagagaggagtggggtttgttccaactcaattc 9808  T

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Target: scaffold1643 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 191 - 153
Alignment:
Q  300 tcgagagaggagtggggtttgttcgaactcaattctctg 338  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  191 tcgagagaggagtggagtttgttccaactcaattctctg 153  T

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Target: scaffold2053 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 123 - 183
Alignment:
Q  156 tcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtc 216  Q
    |||||||||||| ||||  ||||||||||||| |||||||||||  || | ||||||||||    
T  123 tcgttgcctttttcactacacttgttcaccaaacttcattctctgtatctatacgattgtc 183  T

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