View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_88 (Length: 378)
Name: NF1126_low_88
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 38151781 - 38152131
Alignment:
| Q |
1 |
ttaacagtgaaattgcttaatcaacaatgaaggctcaactgtgagcaaatgaacatagcaaatgaacatacttgagtgtaacaaaaagataacagatgtt |
100 |
Q |
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| T |
38151781 |
ttaacagtgaaattgcttaatcaacaatgaaggctcaactgtgagcaaatgagcata-------------cttgagtgtaa-------ataacagatgtt |
38151860 |
T |
|
| Q |
101 |
acacatatgattctgttatcaattcaatttgttcttcctgagatgatagaaattggcaatagcc-tgttcactcttaactttttggtaggccaaagtgcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38151861 |
acacatatgattctgttatcaattcaatttgttcttcctgagatgatagaaattggcaatagccctgttcactcttaactttttggtaggccaaagtgcc |
38151960 |
T |
|
| Q |
200 |
ctgatcactgtgattgctagatctccaggtggaatgaaataaacatttttggaaagttattggtttgataactctccttactctacattcatctgttgac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38151961 |
ctgatcactgtgattgctagatctccaggtggaatgaaataaacatttttggaaagttattggtttgat-actctccttactctacattcatctgttgac |
38152059 |
T |
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| Q |
300 |
aggaaaaattctttgatatgcagtgtgcatcctggaatttgttaactgatgtccttggctttatctctgctc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38152060 |
aggaaaaattctttgatatgcagtgtgcatcctggaatttgttaactgatgtccttggctttatctctgctc |
38152131 |
T |
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