View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_94 (Length: 357)
Name: NF1126_low_94
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 28850408 - 28850345
Alignment:
| Q |
240 |
aatttcctcaagcctaacccacccaaccacttcggttttgagacaacatcccacttcactgcat |
303 |
Q |
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| T |
28850408 |
aatttcctcaagcctaacccacccaaccacttcggttttcagacaacatcccacttcactgcat |
28850345 |
T |
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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 9502630 - 9502564
Alignment:
| Q |
291 |
cacttcactgcatccttcatcgtaaaacctatccccacactcaccgcatcctccatttccttcctac |
357 |
Q |
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| T |
9502630 |
cacttctctccatccttcatcgtaaaacctatctccatactcaccgcatcctccatttccttcctac |
9502564 |
T |
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