View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_98 (Length: 352)
Name: NF1126_low_98
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 22769867 - 22769550
Alignment:
| Q |
1 |
agaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatannnnnnnggtggtgt |
100 |
Q |
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| T |
22769867 |
agaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatatttttttggtggtgt |
22769768 |
T |
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| Q |
101 |
aaatatgtgagtatgaatgtataacagagttctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttggaaaattcactta |
200 |
Q |
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| T |
22769767 |
a--------------------taacagaattctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttggaaaattcactta |
22769688 |
T |
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| Q |
201 |
aaaagaagacttgagaaattggccacaaagagtgtattgagaattttattggagcccttaatggactttacactaatagtccatttcatggagccacaag |
300 |
Q |
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| T |
22769687 |
aa---aagacttgagaaattggccacaaagagtgtattgagaattttattggagcccttatgtgactttacactaatagtccatttcatggagccacaag |
22769591 |
T |
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| Q |
301 |
tttacatcgcagagtccaccacaaattgacaaggtagaatt |
341 |
Q |
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| T |
22769590 |
tttacatcgcagagtccaccacaaattgataaggtacaatt |
22769550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 15528698 - 15528632
Alignment:
| Q |
171 |
gtagttgacttgacttggaaaattcacttaaaaagaagacttgagaaattggccacaaagagtgtattg |
239 |
Q |
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| T |
15528698 |
gtagttgacttgacttcgacaattcacttaga--gaagacttaagaaattggccagaaagagtgtattg |
15528632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 15528589 - 15528529
Alignment:
| Q |
264 |
gactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
324 |
Q |
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| T |
15528589 |
gactttacactaattgtccatttcatggaacccaaagtttacattgtagagtccatcacaa |
15528529 |
T |
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