View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_99 (Length: 352)
Name: NF1126_low_99
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 66 - 339
Target Start/End: Complemental strand, 42228802 - 42228528
Alignment:
| Q |
66 |
atgtggcgcctaggcacgacgaccaaatgaatgtttatgagaattggttgaaatttatctaaatcaacaagatacaacatactagtggtttaggacaaaa |
165 |
Q |
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| T |
42228802 |
atgtcgcgtctaggcacgacgatcaaatgaatgtttataagaattgattgaaatttatctaaatcaacaagatacaacatactagtggtttaggacaaaa |
42228703 |
T |
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| Q |
166 |
gagatcgacaccccacgtttgataaaaatatgttactagaccaacaatagattaatgaagtgatatagtactagaaccgtttaagtacgtggacaagagt |
265 |
Q |
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| T |
42228702 |
gagatcgacacgccacgtttgataaaaatatgttactagatcaacaatagattaatgaagtgatatagtactagaaccgtttaagtacgtggacaagagt |
42228603 |
T |
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| Q |
266 |
ttgattcttgagtcatacgtatagaaaaaatttggttggaag-agataatccatcttatgtgcgtcacaagtttc |
339 |
Q |
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| T |
42228602 |
ttgattcttgagtcatacgtatagaaaaaatttggttggaagaagatagtccatcttatgtgcgtcacaagtttc |
42228528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 42228884 - 42228803
Alignment:
| Q |
7 |
tgttggtctaaaattgctatgactttagtcaagcatagcaggactgtgtttcgccatgtatgtggcgcctaggcacgacgac |
88 |
Q |
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| T |
42228884 |
tgtttgtctaaaattgctatgagtttagtcaagcaaagcaggactgtgtttcgccatgtatgtggcgcctaggcacgacgac |
42228803 |
T |
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