View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11270_high_2 (Length: 401)
Name: NF11270_high_2
Description: NF11270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11270_high_2 |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 27 - 390
Target Start/End: Complemental strand, 369250 - 368891
Alignment:
| Q |
27 |
caaatcctaggtttatgtatctctgtttgatttcatgatgacgtcttgccgtgttttgtcgttgaaatcagcagctctgagagttagacccaccaccacc |
126 |
Q |
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| T |
369250 |
caaatcctaggtttatgtatctctgtttgatttcatgatgacgtcttgccgtgttttgtcgttgaaatcagcagctctgagagttagacccaccaccacc |
369151 |
T |
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| Q |
127 |
atcatccattctccttcttctcctctcctccatcaattctcatcctttatcatcacgttacttacttttcattcatacccattaatttatttctatcaaa |
226 |
Q |
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| T |
369150 |
atcaaccattctccttct---cctctcctccgtcaattctcatgctttatcatcacgttacttacttttcattcatacccattaatttatttctatcaaa |
369054 |
T |
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| Q |
227 |
tatttgattctgatatgtgaatttgatgatatatttaacagaaccaatgtat---accagctaggaagtgtgcaatcacttttgcctctacatagtacag |
323 |
Q |
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| T |
369053 |
tatttgattctgatatgtgaatttgatgatatatttaacagaaccaatgtataccaccagctaggaagtgtgcaatcacttttgcctctacatagtacag |
368954 |
T |
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| Q |
324 |
tggcttcttgtacaatggtttcatttcttaccattgcttcaaggaattctaaacatgtttcattcat |
390 |
Q |
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| T |
368953 |
tggcttcttgtacaatggtttcatttcttacca----ttcaaggaattctaaacatgtttcattcat |
368891 |
T |
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Target: scaffold0495 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 10248 - 10214
Alignment:
| Q |
192 |
ttttcattcatacccattaatttatttctatcaaa |
226 |
Q |
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| T |
10248 |
ttttcattcatacccactaatttatttctatcaaa |
10214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 10233524 - 10233490
Alignment:
| Q |
192 |
ttttcattcatacccattaatttatttctatcaaa |
226 |
Q |
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| T |
10233524 |
ttttcattcatacccactaatttatttctatcaaa |
10233490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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