View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11270_high_6 (Length: 306)
Name: NF11270_high_6
Description: NF11270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11270_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 120 - 299
Target Start/End: Original strand, 38186819 - 38186998
Alignment:
| Q |
120 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
219 |
Q |
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| T |
38186819 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
38186918 |
T |
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| Q |
220 |
agaatcaaggccatgaaggttgaaattcaaacaccaattcaatgattagggctcaaaatgaattgtttttattcatctca |
299 |
Q |
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| T |
38186919 |
agaatcaaggccatgaaggttgaaattgaaacaccaattcaatgattagtgctcaaaatgaattgtttttattcatctca |
38186998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38186699 - 38186733
Alignment:
| Q |
1 |
agggtgagcaataaccagcaagacatttctcttcc |
35 |
Q |
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| T |
38186699 |
agggtgagcaataaccagcaagacatttctcttcc |
38186733 |
T |
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