View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11271_high_1 (Length: 1307)
Name: NF11271_high_1
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 738; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 437 - 1288
Target Start/End: Complemental strand, 26743607 - 26742753
Alignment:
| Q |
437 |
tccattattttctagatgtaattagattcatggaggttgttatcacaatttt-----taacatttaaataactaagtgtttagaatgtgatcatagtttt |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26743607 |
tccattattttctagatgtaattagattcatggaggttgttatcacaattttggaggtaacatttaaataactaagtgtttagaatgtgatcatagtttt |
26743508 |
T |
|
| Q |
532 |
cacatttctgttgcgtgtatgcctgttttaagctcaatctcaaataaaattaatatacgtatcatatcaactcttttatcttcctgttttatacatgtca |
631 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26743507 |
cacatttatgttgcttgtatgcctgttttaagctcaatctcaaataaaattaatatacgtatcatatcacctcttttatcttcctgttttatacatgtca |
26743408 |
T |
|
| Q |
632 |
cgaaaaaacaagattcgtgtgtctccaatgacctcgaaaaattagtgaaaatcgaatcagaaataaggctcgtgtatccaatgaccttggaacaattatt |
731 |
Q |
| |
|
|||| |||||||| |||||| |||||||| ||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
26743407 |
cgaagaaacaagactcgtgt--ctccaatggcctcgaaaaattattgaaaatcgaataagaaataaggtccgtgtgtccaatgacctcggaacaattatt |
26743310 |
T |
|
| Q |
732 |
taaaatcgaatcagatggttcagtcggttaaaccttaaattgtcattgtctaaaatttagttatttgagtcattgaatggttcgatcacaattttatcca |
831 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26743309 |
taaaatcaaatcagatggttcagtcggttaaaccttaaattgtcattgtctaaaatttagttatttgagtcattgagtggttcgatcacaattttatcca |
26743210 |
T |
|
| Q |
832 |
actataagttgaaagtctcattggtttgatgttcggtttctaaaacgtcgcattgaacacacgaaatgtcttctaaaatacatcaaggttcctataggag |
931 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26743209 |
actataagttgaaagtctcactggtttgatgttcgatttctaaaacgtcacattgaacacacgaaatgtcttctaaaatacatcaaggttcctataggag |
26743110 |
T |
|
| Q |
932 |
gatccacttccatgatccgtaaatttccagtatttgttcttgtgtgatcaattcctcacttttaactcaccattttaacgccaatccatttttccccaca |
1031 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26743109 |
gatccacttccatgatccgtaaatttccagtatttgttcttgtgtgatcaattcctcacttttaactcaccattttaacgccaacccatttttccccaca |
26743010 |
T |
|
| Q |
1032 |
tccaaattttttctactattcggacttagtccaagaataaagtgaatgtaagcattggaacactagataaagctatttccatagttgaattccactggtg |
1131 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26743009 |
tccaatttttttctactattcggacttagtccaagaataaagtgaatgtaagcattggaacactagataaagctatttccatagttgaattccactggtg |
26742910 |
T |
|
| Q |
1132 |
tttaatgcttgaacattttcaatcatttgggaattagacactgaaaggaaactacctaggaatgaattggatagatcaacaaagttttcaaagatttatt |
1231 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26742909 |
tttaatgcttgaacaatttcaatcatttgggaattagacactgaaaggaaactacctaggaatgaattggatagttcaacaaagttttcaaagatttatt |
26742810 |
T |
|
| Q |
1232 |
tcttcagcttccaaatcttgaagtccattctaaaccacgtcgtataaacctcaagtc |
1288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26742809 |
tcttcagcttccaaatcttgaagtccattctaaaccacgtcgcataaacctcaagtc |
26742753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 26743994 - 26743601
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26743994 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatggaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
26743895 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26743894 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtgtcatgagaggttggtaacatgggttagggagaaaagaagaa |
26743795 |
T |
|
| Q |
219 |
aaggattagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| ||||||| || |
|
|
| T |
26743794 |
aaggattagaagttggttgttgggttgagcaaattgttgaccctaaattgggatcaaattatgatgtaaagaagatggagactttggcagatgttgcttt |
26743695 |
T |
|
| Q |
319 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgagaggctattaagggatgaccataattaaggctattcatta |
412 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
26743694 |
ggattgtgtaaaggaagagaaagatgttagacccaccatgagtcaagttgttgagaggctattaagggatgagcataattaaggctatccatta |
26743601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 19 - 558
Target Start/End: Complemental strand, 26750919 - 26750383
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26750919 |
gattcgagggacaagaggttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggacgtttatagctatggagtcgttgtgttggag |
26750820 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
26750819 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtgtcatgagaggttggtaacatgggttagggaaaaaagaagaa |
26750720 |
T |
|
| Q |
219 |
aaggattagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
318 |
Q |
| |
|
||||| ||||||||||||||||||| | | ||||||| ||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||| || |
|
|
| T |
26750719 |
aaggagtagaagttggttgttgggtggcacaaattgtagacccaaaattgggatcaaattatgatgtaaagaagatggagacattggcaaatgttgcttt |
26750620 |
T |
|
| Q |
319 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgagaggctattaagggatgaccataattaaggctattcattac-ttta |
417 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| | || | || |||| |
|
|
| T |
26750619 |
ggattgtgtacaagaagataaagatgttagacctaccatgagtcaagttgttgagaggctattaagggatgaccatgattattgatagtgtacacattta |
26750520 |
T |
|
| Q |
418 |
ttgctctacttcctgtgtttccattattttctagatgtaattagattcatggaggttgttatcacaatttt-----taacatttaaataactaagtgttt |
512 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
26750519 |
-----atacttc---tgtttccattattttctacatgtaatttgattcaaggaggatgttatcacaattttggaggtaacatttaaataa-ttagtgttt |
26750429 |
T |
|
| Q |
513 |
agaatgtgatcatagttttcacatttctgttgcgtgtatgcctgtt |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
26750428 |
agaatgtgatcatagttttcacatttctgttgcttatatgcctgtt |
26750383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 26736983 - 26736624
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
26736983 |
gattcgagggacacgaggttacatggcacctgaatgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagttgtggtgttggag |
26736884 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaa |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26736883 |
atgattacaggaaagagtccaacaacaggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttagggagaaaagaagaa |
26736784 |
T |
|
| Q |
219 |
aaggattagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
318 |
Q |
| |
|
||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26736783 |
aagtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
26736684 |
T |
|
| Q |
319 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgagaggct |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26736683 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggct |
26736624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 26713747 - 26713388
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
26713747 |
gattcgagggacacgaggttacatggcacctgaatgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagttgtggtgttggag |
26713648 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| |||||||||| || |
|
|
| T |
26713647 |
atgattaccggaaagagtccaacaactggtatccaaatcaaagacaaagaagagttgtatcatgagagattggtaacatgggttagggagaaaagaaaaa |
26713548 |
T |
|
| Q |
219 |
aaggattagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
318 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26713547 |
aagtactagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
26713448 |
T |
|
| Q |
319 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgagaggct |
378 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
26713447 |
ggattgtgtacaggaagagaaagatgttagacccaccataagtcaagttgttgagaggct |
26713388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 212; E-Value: 1e-115
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 26698595 - 26698236
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
26698595 |
gattcgagggacaagaggttacatggcacctgaatgggttttcaacatgcaaattacttcaaaagtggatgtttatagctatggagttgtggtgttggag |
26698496 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaa |
218 |
Q |
| |
|
|| ||||| || ||| ||||||||||| |||| | || ||||||| |||||| || ||| ||||||| |||| |||||||||||| || ||||| |||| |
|
|
| T |
26698495 |
ataattactggtaagggtccaacaacaagtataccaaacaaagatggagaagacttttgtgatgagagcttggcaacatgggttagggaaaaaagtagaa |
26698396 |
T |
|
| Q |
219 |
aaggattagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
318 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26698395 |
aaggatctaaatttggttgttgggttgaggaaattgctgaccctaaattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcttt |
26698296 |
T |
|
| Q |
319 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgagaggct |
378 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26698295 |
ggattgtgtgtctgaagagaaagatgttagacccaccatgagtcaagttgttgagaggct |
26698236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 212; E-Value: 1e-115
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 26733758 - 26733399
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
26733758 |
gattcgagggacaagaggttacatggcacctgaatgggttttcaacatgcaaattacttcaaaagtggatgtttatagctatggagttgtggtgttggag |
26733659 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaa |
218 |
Q |
| |
|
|| ||||| || ||| ||||||||||| |||| | || ||||||| |||||| || ||| ||||||| || | |||||||||||| || |||||||||| |
|
|
| T |
26733658 |
ataattactggtaagggtccaacaacaagtataccaaacaaagatggagaagacttttgtgatgagagcttagaaacatgggttagggaaaaaagaagaa |
26733559 |
T |
|
| Q |
219 |
aaggattagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcatt |
318 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26733558 |
aaggatctaaatttggttgttgggttgaggaaattgctgaccctaaattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcttt |
26733459 |
T |
|
| Q |
319 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgagaggct |
378 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26733458 |
ggattgtgtggctgaagagaaagatgttagacccaccatgagtcaagttgttgagaggct |
26733399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 24 - 378
Target Start/End: Complemental strand, 26675378 - 26675021
Alignment:
| Q |
24 |
gagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggagatgat |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||| ||| ||||||||| || || ||||||||||| |||||| | || |||||||||||||| |
|
|
| T |
26675378 |
gaggaacaagaggttacatggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagttatggaattgtggtgttggagatgat |
26675279 |
T |
|
| Q |
124 |
taccggaaagagtccaacaacaggtatccaaatcaaagataa---agaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaaaa |
220 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||| |||| | | || || | | |||||||||| ||||||||| ||| |||||||||||| ||| |
|
|
| T |
26675278 |
taccggaaagagtccaacgacctgtatcgaaatcacagatgatggaatagtgtcacataatgagaggttagtaacatggattaaagagaaaagaaggaaa |
26675179 |
T |
|
| Q |
221 |
ggattagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaag-agaatggaa-actttggcaaatgttgcatt |
318 |
Q |
| |
|
| || |||||| || |||||| ||||| |||| ||||||||||||||||||| ||||||||| || | ||| ||| || |||||| || || || |
|
|
| T |
26675178 |
gaatcagaagtgggatgttggattgaacaaatagttgaccctgcattgggattaaattatga--cattgttcaattgaagaccttggcagtggtggcttt |
26675081 |
T |
|
| Q |
319 |
ggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgagaggct |
378 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26675080 |
ggattgtgtagagaaagagaaagatgttagacccaccatgagtcaagttgttgagaggct |
26675021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 24 - 282
Target Start/End: Original strand, 26732014 - 26732272
Alignment:
| Q |
24 |
gagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggagatgat |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||| ||| ||||||||| || || |||||||||||||||||||| || || | |||||||| |
|
|
| T |
26732014 |
gaggaacaagaggttacatggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagctatggagttgtgctgctagagatgat |
26732113 |
T |
|
| Q |
124 |
taccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaaaagga |
223 |
Q |
| |
|
|||||| |||||| ||| ||| ||||| ||||| |||| |||| || | ||||||| |||||||||||||| |||||||||||||| ||| | |
|
|
| T |
26732114 |
taccgggaagagtgcaatgacaagtatcttaatcacagatggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaaatta |
26732213 |
T |
|
| Q |
224 |
ttagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatga |
282 |
Q |
| |
|
|||||| | | || ||||||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
26732214 |
ttagaaatgaaatctttggttgaacaaatagtagaccctacattgggatcaaattatga |
26732272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 26692090 - 26691986
Alignment:
| Q |
274 |
aaattatgatgcaaagagaatggaaactttggcaaatgttgcattggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgtcgag |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
26692090 |
aaattatgatgcaaagagaatggaaactttgacaaatgttgctttggattgtgtggctgaagaaaaagatgttagacctaccatgagtcaagttgttgag |
26691991 |
T |
|
| Q |
374 |
aggct |
378 |
Q |
| |
|
||||| |
|
|
| T |
26691990 |
aggct |
26691986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 24 - 282
Target Start/End: Original strand, 26690703 - 26690961
Alignment:
| Q |
24 |
gagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggagatgat |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||| ||| ||||||||| || || |||||||||||||||||||| || || | |||||||| |
|
|
| T |
26690703 |
gaggaacaagaggttacatggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagctatggagttgtgctgctagagatgat |
26690802 |
T |
|
| Q |
124 |
taccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaagaaaagga |
223 |
Q |
| |
|
||| || |||||| ||| | | ||||| ||||| |||| |||| || | ||||||| |||||||||||||| |||||||||||||| ||| | |
|
|
| T |
26690803 |
tactgggaagagtgcaatgataagtatcttaatcacagatggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaaatta |
26690902 |
T |
|
| Q |
224 |
ttagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatga |
282 |
Q |
| |
|
|||||| | | || ||| ||| |||| || |||||| ||||||||||||||||||| |
|
|
| T |
26690903 |
ttagaaatgaaatctttggtggaacaaatagtagaccctacattgggatcaaattatga |
26690961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 26694864 - 26695056
Alignment:
| Q |
24 |
gagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggagatgat |
123 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||| |||||||| ||| ||||||||| || || |||||||||||||||||||| || || | |||||||| |
|
|
| T |
26694864 |
gaggaacaagaggttacatgggacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagctatggagttgtgctgctagagatgat |
26694963 |
T |
|
| Q |
124 |
taccggaaagagtccaacaacaggtatccaaatcaaagataaagaagagttatgtcatgagaggttggtaacatgggttagagagaaaagaag |
216 |
Q |
| |
|
|||||| |||||| ||| || |||||| ||||| ||| |||| || | ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
26694964 |
taccgggaagagtgcaatgacgggtatcttaatcacagacggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaag |
26695056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 704 - 801
Target Start/End: Complemental strand, 26750353 - 26750256
Alignment:
| Q |
704 |
tgtatccaatgaccttggaacaattatttaaaatcgaatcagatggttcagtcggttaaaccttaaattgtcattgtctaaaatttagttatttgagt |
801 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||| ||| |||||| |||||||||||||||| || || |||||||||||| ||||||||||| |
|
|
| T |
26750353 |
tgtatccaatgaccttgaaacaatatttcaaaatcgaataagacggttcaatcggttaaaccttaaactggcagtgtctaaaatttggttatttgagt |
26750256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 47212159 - 47212054
Alignment:
| Q |
18 |
agattcgagggacaagaggttacatggcacctgagtgggttttcaa-catgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttgg |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||| || ||| | ||| || || ||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
47212159 |
agatacgaggaacaagaggttacatggcacctgagtggattttgaatcattc-aataacatctaaagttgatgtttatagctatggaatggttgtgttgg |
47212061 |
T |
|
| Q |
117 |
agatgat |
123 |
Q |
| |
|
| ||||| |
|
|
| T |
47212060 |
aaatgat |
47212054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1196 - 1271
Target Start/End: Complemental strand, 26749949 - 26749873
Alignment:
| Q |
1196 |
aattggatagatcaacaaagttttcaaagattt-atttcttcagcttccaaatcttgaagtccattctaaaccacgt |
1271 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| || ||||||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
26749949 |
aattggttagtttaacaaagttttcaaagaattgatttcttcagcttccaactcttgaagtgcattccaaaccacgt |
26749873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 881 - 938
Target Start/End: Complemental strand, 26750174 - 26750117
Alignment:
| Q |
881 |
gcattgaacacacgaaatgtcttctaaaatacatcaaggttcctataggaggatccac |
938 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
26750174 |
gcattgatcacacaaaaagtcttctaaaatacattgaggttcatataggaggatccac |
26750117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 21130343 - 21130219
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
|||| |||| ||| |||| || ||||||||||||||| ||||||| | | ||| || || ||||||||||||||||| || || || || ||||| ||| |
|
|
| T |
21130343 |
gattagaggaacacgaggatatatggcacctgagtggattttcaatttaccaataacatctaaagtggatgtttatagttacggggttgtcgtgttagag |
21130244 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaa |
143 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
21130243 |
atgataaccggaaagagtccaacaa |
21130219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 18658505 - 18658383
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
|||| |||| |||||||| || ||||| ||||||||| ||||||| ||| ||| || || ||||||||||||||| | ||||| || || |||||||| |
|
|
| T |
18658505 |
gattagaggaacaagaggatatatggcccctgagtggattttcaatttgccaataacatctaaagtggatgtttatggttatggggttgtattgttggag |
18658406 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaac |
141 |
Q |
| |
|
||||| || |||||||||||||| |
|
|
| T |
18658405 |
atgataactggaaagagtccaac |
18658383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 21108479 - 21108608
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
|||| |||| |||||||| || ||||||||||| ||| ||||||| ||| ||| || || || |||||||||||||| |||||| | ||||| ||||| |
|
|
| T |
21108479 |
gattagaggaacaagagggtatatggcacctgaatggattttcaatttgccaataacatctaaggtggatgtttatagttatggaatagttgttttggaa |
21108578 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggt |
148 |
Q |
| |
|
||||| || ||||| |||||||| |||||| |
|
|
| T |
21108579 |
atgataacaggaaaaagtccaactacaggt |
21108608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 21111322 - 21111259
Alignment:
| Q |
80 |
aaagtggatgtttatagctatggagtcgttgtgttggagatgattaccggaaagagtccaacaa |
143 |
Q |
| |
|
||||||||||||||||| ||||| || ||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
21111322 |
aaagtggatgtttatagttatggggttgttttgttggatatgataaccggaaagagtccaacaa |
21111259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 21098860 - 21098989
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
|||| |||| |||||||| || ||||| || || ||| ||||||| ||| ||| || || ||||| |||||||||||||||||| | ||||| ||||| |
|
|
| T |
21098860 |
gattagaggaacaagagggtatatggccccagaatggattttcaatttgccaataacatctaaagtagatgtttatagctatggaatagttgtattggaa |
21098959 |
T |
|
| Q |
119 |
atgattaccggaaagagtccaacaacaggt |
148 |
Q |
| |
|
||||| || ||||| |||||||| |||||| |
|
|
| T |
21098960 |
atgataacaggaaaaagtccaactacaggt |
21098989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 39132393 - 39132506
Alignment:
| Q |
19 |
gattcgagggacaagaggttacatggcacctgagtgggttttcaacatgcaaatcacttcaaaagtggatgtttatagctatggagtcgttgtgttggag |
118 |
Q |
| |
|
|||| |||| |||||||| || ||||| ||||| ||||||||||| | | ||| || || ||||||||||||||||| ||||| | ||| |||||||| |
|
|
| T |
39132393 |
gattagaggaacaagaggatatatggctcctgaatgggttttcaatttaccaataacatctaaagtggatgtttatagttatgggattgttttgttggag |
39132492 |
T |
|
| Q |
119 |
atgattaccggaaa |
132 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
39132493 |
atgataactggaaa |
39132506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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