View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_14 (Length: 507)
Name: NF11271_high_14
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 50 - 493
Target Start/End: Original strand, 32065319 - 32065752
Alignment:
| Q |
50 |
gtatctgatccagtttaaaaatgttagttaatacttaccgttatagtagcagttaacaacagttaattacagttaaaaacttgatgtttctgtacgagac |
149 |
Q |
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| T |
32065319 |
gtatctgatccagtttaaaaatgttagttaatacttaccgttatagtagcagttaacaacagttaa----------aaacttgatgtttctgtacgagac |
32065408 |
T |
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| Q |
150 |
atacaccgcacacttctcacttacacgtggaatccgcgtcggcacgatcccggtcaatttcaaacacaaccaatcactaaacgccacgaataacgacaac |
249 |
Q |
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| T |
32065409 |
atacaccgcacacttctcacttacacgtggaatccgcgtcggcaagatcccggtcaatttcaaacataaccaatcactaaacgccacgaataacgacaac |
32065508 |
T |
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| Q |
250 |
aacatgcgaatatgttaatgttgttcttcattagcgtataagccttgtctcttatccctgcacgacacttgtaaacaatctattaatcaatcaaaattca |
349 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065509 |
aacatgcgaatatgttaatgtt---cttcattagcgtataagccttgtctcttatccctgcacgacacttgtaaacaatctattaatcaatcaaaattca |
32065605 |
T |
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| Q |
350 |
aatctcttcctagtttaaatcaattacaacaattttcaacgcgtctttaatagatcagtagtacaattcaacaaagaatctcacaa---nnnnnnngctc |
446 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32065606 |
aatcttttcctagtttaaatcaattacaacaattttcaacgcgtcttcaatagatcagtagtacaattcaacaaagaatctcacaattttgtttgtgctc |
32065705 |
T |
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| Q |
447 |
atgtttttacttggattgaaaagctatagaagtgattttggtgttgg |
493 |
Q |
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| T |
32065706 |
atgtttttacttggattgaaaagctatagaagtgattttggtgttgg |
32065752 |
T |
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