View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_16 (Length: 442)
Name: NF11271_high_16
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 426
Target Start/End: Original strand, 12707143 - 12707544
Alignment:
| Q |
21 |
cacagcacggtgtatgcaggcgtnnnnnnnttaaaattaaatgcaactttagtgtatacaaattaaaatcaatacttttattttacaaggattaaattca |
120 |
Q |
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| T |
12707143 |
cacagcatggtgtatgcaggcgtaaaaaaattaaaattaaatgcaactttagtgtatacaaattaaaatcaacacttttattttacagtgattaaattca |
12707242 |
T |
|
| Q |
121 |
atacttttttaagggaagtcaatactaatatatacaagaaattgtatattcatatcaacaatttcattaacaactaagatgccctatttttatgatctta |
220 |
Q |
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| T |
12707243 |
atacttttttaagggaagtcaatactaatatatacaagaaattgtatattcatatcaacaatttctttaacaactaagatgccctatttttatgatctta |
12707342 |
T |
|
| Q |
221 |
acaacnnnnnnnnntattttgaaagagaatgcataacaatggtagacttatcagctttgtatttgggtattccattaggtagtgaacctaacaaaaccaa |
320 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12707343 |
acaa----aaaaaatattttgaaagagaatgcataacaatggtagacttatcagctttgtatttgggtattccattaggtagtgaacctaacaaaaccaa |
12707438 |
T |
|
| Q |
321 |
aagcttggaatcttgtactaaagaaaactcaagataaattggcatcctaaaatttaaaggtcctcactgtagtatcgtattctttttcttagggttcagt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12707439 |
aagcttggaatcttgtactaaagaaaactcaagataaattggcatcctaaaaattaaaggtcctcactgtagtatcgtattcgttttcttagggttcagt |
12707538 |
T |
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| Q |
421 |
gatgtc |
426 |
Q |
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|||||| |
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| T |
12707539 |
gatgtc |
12707544 |
T |
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