View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11271_high_17 (Length: 440)

Name: NF11271_high_17
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11271_high_17
NF11271_high_17
[»] chr4 (22 HSPs)
chr4 (18-426)||(50249691-50250104)
chr4 (152-336)||(37826021-37826203)
chr4 (305-374)||(48734359-48734428)
chr4 (170-260)||(48146945-48147034)
chr4 (170-260)||(48170195-48170284)
chr4 (306-374)||(48865055-48865121)
chr4 (195-261)||(7793664-7793730)
chr4 (268-326)||(7801490-7801548)
chr4 (164-258)||(48155593-48155686)
chr4 (305-374)||(48853665-48853735)
chr4 (172-259)||(45371174-45371260)
chr4 (221-335)||(50669901-50670013)
chr4 (199-261)||(7816825-7816887)
chr4 (305-379)||(45370972-45371046)
chr4 (170-302)||(7766475-7766602)
chr4 (170-261)||(7790915-7791007)
chr4 (235-306)||(7772880-7772946)
chr4 (170-213)||(48864853-48864896)
chr4 (268-322)||(7814330-7814384)
chr4 (268-322)||(7823822-7823876)
chr4 (340-374)||(50681946-50681980)
chr4 (333-374)||(7879391-7879432)
[»] chr7 (1 HSPs)
chr7 (304-374)||(48884917-48884987)
[»] chr1 (2 HSPs)
chr1 (159-209)||(24367923-24367973)
chr1 (170-210)||(24323777-24323817)
[»] chr8 (2 HSPs)
chr8 (170-203)||(12201168-12201201)
chr8 (170-203)||(12445596-12445629)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 50250104 - 50249691
Alignment:
Q  18 gtatgctaatatgtgtttgactgcatttgtaacatgagctgtggaataatttaacaaaactggaagtcttgatactattcaatgaataaagctaacaaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50250104 gtatgctaatatgtgtttgactgcatttgtaacatgagctgtggaataatttaacaaaactggaagtcttgatactattcaatgaataaagctaaccaaa 50250005  T
Q  118 acaa------cacacacactactagataagaattagcagaattacagatatcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaactgg 211  Q
    ||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50250004 acaatacacacacacacactactagataagaattagcagaattacagatatcgacagttttgtttgtgcgattcactgttatttatgcatttgtaactgg 50249905  T
Q  212 atagagttataaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttt 311  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249904 atagagttctaaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaaggttt 50249805  T
Q  312 tgttctctaatttcagcggactctatt-aactttggcccttgccatttatctgtttcaaaccagaaaagnnnnnnnnctaatttcaaaattattcagttc 410  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||||    
T  50249804 tgttctctaatttcagtggactctattaaactttggcccttgccatttatctgtttcaaaccaggaaa--aaaaaaactaatttcaaaattattcagttc 50249707  T
Q  411 tgctctctatgttctt 426  Q
    ||||||||||||||||    
T  50249706 tgctctctatgttctt 50249691  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 152 - 336
Target Start/End: Complemental strand, 37826203 - 37826021
Alignment:
Q  152 attacagatatcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaatt 251  Q
    |||||| |||| |||||||||| || || | |||| |||||||||||||| ||||| ||||| ||||| ||| | |||||| |||||||||||||||||     
T  37826203 attacaaatattgacagttttgattatgtgtttcattgttatttatgcatatgtaattggattgagttctaattgtatgtttttgtcactgtctgaaatg 37826104  T
Q  252 gttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaa---aaggttttgttctctaatttcagcggactcta 336  Q
    ||||||||||      ||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||| ||||||||    
T  37826103 gttttatatg-----gtaaattaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatttcagtggactcta 37826021  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 48734428 - 48734359
Alignment:
Q  305 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 374  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  48734428 aaggttttcttctctaattttagcggactctattaactttagcccttgccatttctctgtttcaaaccag 48734359  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 48147034 - 48146945
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatat 260  Q
    |||||||| | |||||| |||||||||||||||||||||||||| ||||| | ||| |||||||| ||||||| ||||||||||| |||||    
T  48147034 tttgtttgcgtgattcagtgttatttatgcatgtgtaactggattgagttct-aatgtatgttgtggtcactgcctgaaattgttctatat 48146945  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 48170284 - 48170195
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatat 260  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||  | ||| |||||||| |||||||   |||||||| ||||||    
T  48170284 tttgtttgtgtgattcactgttatttatgcatgtgtaactggattgagtgct-aatgtatgttgtggtcactgctagaaattgtattatat 48170195  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 48865055 - 48865121
Alignment:
Q  306 aggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 374  Q
    ||||||||||||||||||||||||||||| |||| || ||||| ||||||||  |||||||||||||||    
T  48865055 aggttttgttctctaatttcagcggactccattatctatggccattgccatt--tctgtttcaaaccag 48865121  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 7793730 - 7793664
Alignment:
Q  195 tatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 261  Q
    ||||||||||||||||||| || || |||||  |||||||||||||||  |||||||||||||||||    
T  7793730 tatgcatgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttatatg 7793664  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 7801490 - 7801548
Alignment:
Q  268 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaatttca 326  Q
    |||| |||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  7801490 taaaataatctaattagtttatgcatgttgaaggagaaaggttttgttctctaatttca 7801548  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 48155686 - 48155593
Alignment:
Q  164 gacagttttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttat 258  Q
    ||||| |||||||||| ||||||||| ||||||| ||||||| ||||||| ||||| ||| | |||||||| |||| ||  ||||||||||||||    
T  48155686 gacagctttgtttgtgtgattcactgatatttatacatgtgtcactggattgagttctaa-tgtatgttgtggtcattgcttgaaattgttttat 48155593  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 374
Target Start/End: Original strand, 48853665 - 48853735
Alignment:
Q  305 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctg-tttcaaaccag 374  Q
    |||||||||||||||||||| || |||  ||||||| ||||||||||||||||| |||| |||||||||||    
T  48853665 aaggttttgttctctaattttagtggaaactattaagtttggcccttgccatttctctgttttcaaaccag 48853735  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 45371260 - 45371174
Alignment:
Q  172 tgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttata 259  Q
    |||||||| |||||||| |||||||||||||||||  ||||| ||||| | ||| ||||||||  |||||||  ||||||||||||||    
T  45371260 tgtttgtgtgattcacttttatttatgcatgtgtagttggattgagttct-aatgtatgttgtgatcactgttagaaattgttttata 45371174  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 50669901 - 50670013
Alignment:
Q  221 taaatatatgttgttgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaag---gttttgttct 317  Q
    ||||| ||||||||||| ||||  ||||||||||||||||| |||| |||     |||| | | ||||||||| |||||||||||||   ||||||||||    
T  50669901 taaatgtatgttgttgtgactgcttgaaattgttttatatggtaaactaa-----tctggttaatttatgcatgttgaaggaaaaagaaggttttgttct 50669995  T
Q  318 ctaatttcagcggactct 335  Q
    ||||||| || |||||||    
T  50669996 ctaattttagtggactct 50670013  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 7816887 - 7816825
Alignment:
Q  199 catgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 261  Q
    ||||||||||||||| || || |||||  |||||||||||||||  |||||||||||||||||    
T  7816887 catgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttttatatg 7816825  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 45371046 - 45370972
Alignment:
Q  305 aaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccagaaaag 379  Q
    ||||||||||||||||| || || ||||||||||||||||  |||||||||| | ||  ||||||||||| ||||    
T  45371046 aaggttttgttctctaaatttagtggactctattaactttatcccttgccatctctcaatttcaaaccaggaaag 45370972  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 7766475 - 7766602
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgtgtaactggatagagttataaatatatgttgttgtcactgtctgaaattgttttatatgataaaata 269  Q
    |||||||||  | |||| |||| ||||||||||||||||||||| |  || ||||| |||||| ||||||||   ||||||||||| || ||      ||    
T  7766475 tttgtttgtatgcttcaatgttgtttatgcatgtgtaactggattgcattctaaatttatgttattgtcactacttgaaattgtttcatgtg-----gta 7766569  T
Q  270 aattaatctgatgagtttatgcatattgaagga 302  Q
    |||||||||  ||||||||||||| ||||||||    
T  7766570 aattaatcttttgagtttatgcatgttgaagga 7766602  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 7790915 - 7791007
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgtgtaactgga-tagagttataaatatatgttgttgtcactgtctgaaattgttttatatg 261  Q
    |||||||||| || |||||||||||||||||| |||||||||| | | ||| ||||| |||| || ||||| ||  |||||||| ||||||||    
T  7790915 tttgtttgtgtgactcactgttatttatgcatctgtaactggatttgcgttttaaatgtatgctgatgtcattgcttgaaattgatttatatg 7791007  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 7772946 - 7772880
Alignment:
Q  235 tgtcactgtctgaaattgttttatatgataaaataaattaatctgatgagtttatgcatattgaaggaaaaa 306  Q
    ||||||||  |||||||||||||||||      |||||||||||||||||||||| ||| ||||||||||||    
T  7772946 tgtcactgcttgaaattgttttatatg-----gtaaattaatctgatgagtttatacatgttgaaggaaaaa 7772880  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 48864853 - 48864896
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgtgtaactggat 213  Q
    |||||||||| || ||| ||||||||||||||||||||||||||    
T  48864853 tttgtttgtgtgaatcattgttatttatgcatgtgtaactggat 48864896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 7814330 - 7814384
Alignment:
Q  268 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 322  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7814330 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7814384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 7823822 - 7823876
Alignment:
Q  268 taaattaatctgatgagtttatgcatattgaaggaaaaaggttttgttctctaat 322  Q
    |||| |||||| || ||||||||||| || ||||| |||||||||||||||||||    
T  7823822 taaaataatctaattagtttatgcatgttcaaggagaaaggttttgttctctaat 7823876  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 374
Target Start/End: Original strand, 50681946 - 50681980
Alignment:
Q  340 actttggcccttgccatttatctgtttcaaaccag 374  Q
    ||||||||||||||||||| |||||||||||||||    
T  50681946 actttggcccttgccatttctctgtttcaaaccag 50681980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 7879391 - 7879432
Alignment:
Q  333 tctattaactttggcccttgccatttatctgtttcaaaccag 374  Q
    |||| ||||||||||||||| ||||| |||||||||||||||    
T  7879391 tctactaactttggcccttgtcatttctctgtttcaaaccag 7879432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 48884917 - 48884987
Alignment:
Q  304 aaaggttttgttctctaatttcagcggactctattaactttggcccttgccatttatctgtttcaaaccag 374  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||||| |||||   |||||||||||||    
T  48884917 aaaggctttgttctctaatttcaatggactctattaactctggcccttgtcatttcattgtttcaaaccag 48884987  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 24367923 - 24367973
Alignment:
Q  159 atatcgacagttttgtttgtgcgattcactgttatttatgcatgtgtaact 209  Q
    |||| ||||| |||||||| |||||||||| ||||||||||||||||||||    
T  24367923 atattgacagctttgtttgggcgattcactattatttatgcatgtgtaact 24367973  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 24323777 - 24323817
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgtgtaactg 210  Q
    |||||||||||||||| | ||||||||||||| ||||||||    
T  24323777 tttgtttgtgcgattcgcggttatttatgcatatgtaactg 24323817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 12201168 - 12201201
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgt 203  Q
    |||||||||| |||||||||||||||||||||||    
T  12201168 tttgtttgtgtgattcactgttatttatgcatgt 12201201  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 12445596 - 12445629
Alignment:
Q  170 tttgtttgtgcgattcactgttatttatgcatgt 203  Q
    |||||||||| |||||||||||||||||||||||    
T  12445596 tttgtttgtgtgattcactgttatttatgcatgt 12445629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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