View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_19 (Length: 430)
Name: NF11271_high_19
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 15688466 - 15688864
Alignment:
| Q |
19 |
ggttgaccacttgaaagaatccccacttttcacttgcatattttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaaggtcc |
118 |
Q |
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| T |
15688466 |
ggttgaccacttgaaagaatccccacttttcacttgcatactttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaaggtcc |
15688565 |
T |
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| Q |
119 |
aaaatctatgattggaatactaagattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaataaaaatctttgggactttggtcaaa |
218 |
Q |
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| T |
15688566 |
aaaatctatgattggaatactaagattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaatgaaaatctttgggactttggtcaaa |
15688665 |
T |
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| Q |
219 |
ccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttgatttctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15688666 |
ccagcatctacaagtccttttacaccttcttttgattcatcaagcagctttaactctttctgtctatcataaacatgttcatggtcttgtttgatttctt |
15688765 |
T |
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| Q |
319 |
ctaggtttgtgttcaccatgtttgagtttctttctttggcaacaactcaacagatgagaaattgtctttggctttttgggatattgtacagtgatgtct |
417 |
Q |
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| T |
15688766 |
ctaggtttgtgttcaccatgtttgagtttctttctttgacaacaactcaacagaggagatattgtctttggctttttgggatattgtacagtgatgtct |
15688864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 15682126 - 15682445
Alignment:
| Q |
19 |
ggttgaccacttgaaagaatccccacttttcacttgcatattttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaaggtcc |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15682126 |
ggttgaccacttgaaagaacccccacttttcacttgcatgctttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaaggacc |
15682225 |
T |
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| Q |
119 |
aaaatctatgattggaatactaagattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaataaaaatctttgggactttggtcaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15682226 |
aaaatctatgattggaatactaagattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaatgaaaatctttgggactttggtcaaa |
15682325 |
T |
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| Q |
219 |
ccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttgatttctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
15682326 |
ccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttctgtctatcataaacatgttcatgttcttgtttgatttctt |
15682425 |
T |
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| Q |
319 |
ctaggtttgtgttcaccatg |
338 |
Q |
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|||| ||||||||||||||| |
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| T |
15682426 |
ctagatttgtgttcaccatg |
15682445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 417
Target Start/End: Original strand, 15684182 - 15684570
Alignment:
| Q |
29 |
ttgaaagaatccccacttttcacttgcatattttactttctcaattatctctaaacgtgaacttgaacttgtgttggtaaataaaggtccaaaatctatg |
128 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
15684182 |
ttgaaagaa-ccccacttttcacttgcatgctttactttctcaattatctctaaacgtgaacttgaacttgtgt-ggtaaataaaggtccaaagtctatg |
15684279 |
T |
|
| Q |
129 |
attggaatactaagattggttgaactggtttgtttgttgttatgttcatgaatcttatcatgaataaaaatctttgggactttggtcaaaccagcatcta |
228 |
Q |
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| T |
15684280 |
attggaatactaagattggttgaactggtttgtttgttgttatgttcatgaaccttatcatgaatgaaaatctttgggaatttggtcaaaccagcatcaa |
15684379 |
T |
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| Q |
229 |
caagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttgatttcttctaggtttgt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
15684380 |
caagtccttttacaccttcttttgattcatcaagaagcattaactctttgtgtctatcataaacatgttcacggtcttgtttgatttcttctagatttgt |
15684479 |
T |
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| Q |
329 |
gttcaccatgtttgagtttctttctttggcaacaactcaacagatgaga-aattgtc-tttggctttttgggatattgtacagtgatgtct |
417 |
Q |
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|||| ||||||||||||||||||||| | |||||| |||||||||||| | ||||| |||| ||||||||| |||||||| |||||||| |
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| T |
15684480 |
gttccccatgtttgagtttctttcttggacaacaaaacaacagatgagatatttgtcttttgtttttttgggaaattgtacaatgatgtct |
15684570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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