View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_20 (Length: 418)
Name: NF11271_high_20
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 49554498 - 49554838
Alignment:
| Q |
1 |
ttgctgtctaaatcaggacactttagatggtcttgtgtgcggtgaaataatagttttgtaagcaggatttgttgacattcatattgtgcttaatatgata |
100 |
Q |
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| T |
49554498 |
ttgctgtctaaatcaggacactttagatggtcttgtgtgcggtgaaataatagttttgtaagcaggatttgttgacattcatattgtgcttaatatgata |
49554597 |
T |
|
| Q |
101 |
acacattttgcaaattatgctttctgaggaaaggacagtgtggtcatgcatcagtagacttggtcgagtaaatcacctaacttccctttgaaattatagg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49554598 |
acacattttgcaaattatgctttccgaggaaaggacagtgtggtcatgcatcagtagacttggtcgagtaaatcacctaacttccctttgaaattatagg |
49554697 |
T |
|
| Q |
201 |
ggactg-nnnnnnnnnaccccctctgaaatttgcaaatagacaaaacgatttctgaatttgaacgacatcgagtaagtttgtccttctgttcacttatgc |
299 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49554698 |
ggactgttttttttttaccccctctgaaatttgcaaatagacaaaatgatttctgaatttgaacgacatcgagtaagtttgtccttctgttcacttatgc |
49554797 |
T |
|
| Q |
300 |
cgactgtggatatggcaagttcacatataagtcaactcaat |
340 |
Q |
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| T |
49554798 |
cgactgtggatgtggcaagttcacatataagtcaactcaat |
49554838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 49554836 - 49554883
Alignment:
| Q |
361 |
aattgttcaatcttagaaagaaattggatacccattttgctcttcatc |
408 |
Q |
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| T |
49554836 |
aattgttcaatcttagaaagaaattggatacccattttgctcttcatc |
49554883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 8557191 - 8557081
Alignment:
| Q |
13 |
tcaggacactttagatggtcttgtgtgcggtgaaataatagttttgtaagcaggatttgttgacattcatattgtgcttaatatgataacacattttgca |
112 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||| | |
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| T |
8557191 |
tcaggacactttagatcatcttgtgtgcggtgacataatagttttgtgagcagggtttgttcacattcatattgtgcttaatatgataatacattttgta |
8557092 |
T |
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| Q |
113 |
aattatgcttt |
123 |
Q |
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| ||||||||| |
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| T |
8557091 |
agttatgcttt |
8557081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 8556871 - 8556818
Alignment:
| Q |
353 |
agggactaaattgttcaatcttagaaagaaattggatacccattttgctcttca |
406 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8556871 |
agggactaaattgttcaaacttagaaagaaattggatacccattttgctcttca |
8556818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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