View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_25 (Length: 388)
Name: NF11271_high_25
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 93 - 370
Target Start/End: Complemental strand, 31720044 - 31719767
Alignment:
| Q |
93 |
atcccttttgcaacccaacgaatagggccgagaaaggcattgttaatgtactgaaggaatttaacctttataatagatctagggatatttacaacactat |
192 |
Q |
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| T |
31720044 |
atcccttttgcaacccaacgaatagggccgagaaaggcattgttaatgtactgaaggaatttaacctttataatagatctatggatatttacaacactgt |
31719945 |
T |
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| Q |
193 |
tgaacggtgtgggacttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagcagc |
292 |
Q |
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| T |
31719944 |
tgaacggtgtgggacttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagcagc |
31719845 |
T |
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| Q |
293 |
aattaaacgtctatattcatctcatgaatttcttgttttgcctcaagctttatgaggtagccagtaggacaaaatggt |
370 |
Q |
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| T |
31719844 |
aattaaacgtctatattcatctcatgaatttcttgttttgcctcaagctttatgaggtagccagtaggacaaaatggt |
31719767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 31011689 - 31011773
Alignment:
| Q |
206 |
acttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagca |
290 |
Q |
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| T |
31011689 |
acttaaacttagacgtctcactttatcaggctccactttgagacattccactattccacctttaggcttcccagcatgaatagca |
31011773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 31709633 - 31709549
Alignment:
| Q |
206 |
acttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagca |
290 |
Q |
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| T |
31709633 |
acttaaacttagacgtctcactttatcaggctccactttgagacattccactattccacctttaggcttcccagcatgtatagca |
31709549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31720135 - 31720079
Alignment:
| Q |
1 |
ttttcttatatatattagggttgacaaaaaagatctatatcattatctacacattta |
57 |
Q |
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| T |
31720135 |
ttttcttatatatatttgggttgacaaaaaagatctatatcattatccacacattta |
31720079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 31712084 - 31712018
Alignment:
| Q |
143 |
ctgaaggaatttaacctttataatagatctag-ggatatttacaacactattgaacggtgtgggact |
208 |
Q |
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| T |
31712084 |
ctgaaggagtttaacctttataatagatctcttggatacttactacactattgaacggtgtgggact |
31712018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 31719469 - 31719433
Alignment:
| Q |
22 |
tgacaaaaaagatctatatcattatctacacatttaa |
58 |
Q |
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| T |
31719469 |
tgacaaaaaaaatctatatcattatccacacatttaa |
31719433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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