View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_27 (Length: 345)
Name: NF11271_high_27
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 11734188 - 11733869
Alignment:
| Q |
1 |
tcgagatatcttgatttcatgcaattgtgaccgcacacaactcaaatccaagtgacaaatgtctatatcctgtaagcgaatattggattggatcttcacc |
100 |
Q |
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| T |
11734188 |
tcgagatatcttgattgcatgcaattgtgaccgcacacaactcaaatccaagtgacaaatgtctatatcctgtaagcgaatattggattggatcttcacc |
11734089 |
T |
|
| Q |
101 |
aacatcttcatctatgctccttcaagctcattttttataacctgcaaatcaaaacatttcaatatacataacagtataattagtaccagataaataacat |
200 |
Q |
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| T |
11734088 |
aacatcttcatctatgctccttcaagctcattttttataacctgcaaatcaaaacatttcaatatacataacagtataattagtaccagataaataacat |
11733989 |
T |
|
| Q |
201 |
ggctagaagtaaaagtgagtgagtaaattacacacttctttttaatacatgtttaaatagcataatactataaataaatatacattttcctttgctttta |
300 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11733988 |
ggctagaagtaaaagagaatgagtaaattacacacttctttttaatacatttttaaatagcacaatactataaataaatatacattttcctttgctttta |
11733889 |
T |
|
| Q |
301 |
tgaaaaatatattagagaaa |
320 |
Q |
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|||||||||||||||||||| |
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| T |
11733888 |
tgaaaaatatattagagaaa |
11733869 |
T |
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