View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_28 (Length: 344)
Name: NF11271_high_28
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_28 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 20170785 - 20171128
Alignment:
| Q |
1 |
caagacagatcatcattcatgtcaagagacatcacattgtgctnnnnnnnnggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170785 |
caagacagatcatcattcatgtcaagagacatcacattgtgctaaaaaaaaggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtt |
20170884 |
T |
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| Q |
101 |
tgtttgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170885 |
tgtttgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagac |
20170984 |
T |
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| Q |
201 |
aaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctccaa |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170985 |
aaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctccaa |
20171084 |
T |
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| Q |
301 |
caaggagttctcagcctatataaaccattacacctcgagtttga |
344 |
Q |
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| T |
20171085 |
caaggagttctcagcctatataaaccattacacctcgagtttga |
20171128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 44392495 - 44392838
Alignment:
| Q |
1 |
caagacagatcatcattcatgtcaagagacatcacattgtgctnnnnnnnnggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392495 |
caagacagatcatcattcatgtcaagagacatcacattgtgctaaaaaaaaggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtt |
44392594 |
T |
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| Q |
101 |
tgtttgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392595 |
tgtttgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagac |
44392694 |
T |
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| Q |
201 |
aaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctccaa |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392695 |
aaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctccaa |
44392794 |
T |
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| Q |
301 |
caaggagttctcagcctatataaaccattacacctcgagtttga |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392795 |
caaggagttctcagcctatataaaccattacacctcgagtttga |
44392838 |
T |
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